C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: seizure related 6 homolog (mouse)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000063015 SEZ6 9606 - 17:28954901-29006440 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317338 SEZ6-002 28954905-29006298 protein_coding
  ENST00000335960 SEZ6-201 28954931-29006048 protein_coding
  ENST00000360295 SEZ6-001 28954901-29006145 protein_coding
  ENST00000442608 SEZ6-012 28955131-29005913 protein_coding
  ENST00000535262 SEZ6-018 28955131-28956439 protein_coding
  ENST00000539265 SEZ6-013 28960240-28960973 protein_coding
  ENST00000540419 SEZ6-006 28954906-28981592 nonsense_mediated_decay
  ENST00000540632 SEZ6-003 28954905-28981872 protein_coding
  ENST00000544224 SEZ6-011 28956364-28957813 retained_intron
  ENST00000585644 SEZ6-017 28981550-29006440 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000335960ENST00000442608ENST00000535262ENST00000539265ENST00000540419ENST00000540632ENST00000544224
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000335960 N/A N/A N/A 2.067±0.00 0.060±0.00 0.079±0.00 N/A 0.091±0.00 N/A N/A N/A N/A N/A
ENST00000442608 N/A 0.129±0.00 N/A 1.743±0.00 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A 0.158±0.03
ENST00000535262 N/A 0.078±0.00 N/A 3.046±0.00 0.252±0.00 N/A 0.059±0.04 0.025±0.00 N/A N/A 0.124±0.00 0.200±0.04 0.927±0.00
ENST00000539265 0.042±0.00 N/A N/A N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A
ENST00000540419 N/A N/A 0.249±0.00 0.731±0.21 0.087±0.00 0.020±0.00 N/A 0.055±0.00 N/A N/A 0.015±0.00 0.031±0.01 N/A
ENST00000540632 N/A N/A N/A 1.055±0.64 N/A 0.123±0.00 N/A N/A N/A 0.005±0.00 N/A 0.101±0.00 N/A
ENST00000544224 N/A N/A N/A N/A N/A N/A N/A N/A 0.313±0.00 0.328±0.00 0.135±0.00 0.162±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076L CIL_00076L_0002 CGP 17:28950513-29057220
CIL_0005RW CIL_0005RW_0002 CGP 17:28954901-29180412

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005615 IEA extracellular space
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0008344 IEA adult locomotory behavior
GO:0016021 IEA integral component of membrane
GO:0021680 IEA cerebellar Purkinje cell layer development
GO:0043025 IEA neuronal cell body
GO:0043197 IEA dendritic spine
GO:0043198 IEA dendritic shaft
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050773 IEA regulation of dendrite development
GO:0060074 IEA synapse maturation
GO:0060079 IEA regulation of excitatory postsynaptic membrane potential
GO:0090036 IEA regulation of protein kinase C signaling
GO:0097440 IEA apical dendrite
GO:1900006 IEA positive regulation of dendrite development
GO:2000171 IEA negative regulation of dendrite development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076220 sez6a seizure related 6 homolog a protein_coding Danio_rerio
ENSDARG00000079414 sez6b seizure related 6 homolog b protein_coding Danio_rerio
ENSMUSG00000000632 Sez6 seizure related gene 6 protein_coding Mus_musculus

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