C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: seizure related 6 homolog (mouse)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540419 SEZ6-006 ENSG00000063015 9606 - 17:28954906-28981592 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyOvaryPlacentaENST00000540419
Transcript ID Bladder Brain Breast Colon Kidney Ovary Placenta
ENST00000540419 0.249±0.00 0.731±0.21 0.087±0.00 0.020±0.00 0.055±0.00 0.015±0.00 0.031±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076L CIL_00076L_0002 CGP 17:28950513-29057220
CIL_0005RW CIL_0005RW_0002 CGP 17:28954901-29180412

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000151982 Sez6-007 nonsense_mediated_decay Mus_musculus 0 3186
ENSMUST00000093995 Sez6-001 protein_coding Mus_musculus 0 1980
ENSMUST00000000646 Sez6-009 protein_coding Mus_musculus 0 1788
ENSMUST00000142542 Sez6-005 retained_intron Mus_musculus 0 1585
ENSMUST00000155087 Sez6-004 retained_intron Mus_musculus 0 1454
ENSMUST00000138749 Sez6-008 retained_intron Mus_musculus 0 527
ENSMUST00000140630 Sez6-003 protein_coding Mus_musculus 0 520
ENSMUST00000126866 Sez6-006 retained_intron Mus_musculus 0 398

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