C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: seizure related 6 homolog (mouse)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317338 SEZ6-002 ENSG00000063015 9606 - 17:28954905-29006298 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076L CIL_00076L_0002 CGP 17:28950513-29057220
CIL_0005RW CIL_0005RW_0002 CGP 17:28954901-29180412

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005615 IEA extracellular space
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0008344 IEA adult locomotory behavior
GO:0016021 IEA integral component of membrane
GO:0021680 IEA cerebellar Purkinje cell layer development
GO:0043025 IEA neuronal cell body
GO:0043197 IEA dendritic spine
GO:0043198 IEA dendritic shaft
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050773 IEA regulation of dendrite development
GO:0060074 IEA synapse maturation
GO:0060079 IEA regulation of excitatory postsynaptic membrane potential
GO:0090036 IEA regulation of protein kinase C signaling
GO:0097440 IEA apical dendrite
GO:1900006 IEA positive regulation of dendrite development
GO:2000171 IEA negative regulation of dendrite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093995 Sez6-001 protein_coding Mus_musculus 0 4050
ENSMUST00000000646 Sez6-009 protein_coding Mus_musculus 0 3467
ENSMUST00000142542 Sez6-005 retained_intron Mus_musculus 0 2117
ENSMUST00000151982 Sez6-007 nonsense_mediated_decay Mus_musculus 0 2084
ENSMUST00000155087 Sez6-004 retained_intron Mus_musculus 0 1949
ENSMUST00000138749 Sez6-008 retained_intron Mus_musculus 0 1029
ENSMUST00000126866 Sez6-006 retained_intron Mus_musculus 0 616
ENSMUST00000140630 Sez6-003 protein_coding Mus_musculus 0 544

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