C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000063177 RPL18 9606 - 19:48615328-48619536 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000084795 RPL18-006 48615331-48617884 protein_coding
  ENST00000546623 RPL18-015 48615333-48617797 protein_coding
  ENST00000547892 RPL18-003 48615332-48619175 retained_intron
  ENST00000547897 RPL18-010 48615330-48619168 non_stop_decay
  ENST00000549273 RPL18-014 48615366-48619177 protein_coding
  ENST00000549370 RPL18-009 48615336-48619176 nonsense_mediated_decay
  ENST00000549533 RPL18-016 48615331-48616425 retained_intron
  ENST00000549920 RPL18-001 48615328-48619536 protein_coding
  ENST00000550645 RPL18-012 48615331-48619163 protein_coding
  ENST00000550671 RPL18-007 48617158-48619184 retained_intron
  ENST00000550973 RPL18-013 48615393-48619127 protein_coding
  ENST00000551749 RPL18-004 48615331-48619183 retained_intron
  ENST00000552347 RPL18-005 48615328-48619163 retained_intron
  ENST00000552588 RPL18-008 48615331-48619181 protein_coding
  ENST00000552705 RPL18-002 48615982-48619183 retained_intron
  ENST00000552851 RPL18-011 48616266-48619164 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000084795ENST00000547897ENST00000549370ENST00000549920ENST00000550645ENST00000552588
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000084795 439.707±0.00 609.237±0.00 38.176±0.00 108.411±49.25 266.219±135.53 391.205±234.04 23.791±0.00 266.980±134.72 80.741±3.40 146.509±45.59 131.066±33.92 1053.448±1080.09 1141.424±799.25 206.761±152.58
ENST00000547897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 55.320±0.00 73.868±0.00 N/A
ENST00000549370 397.678±0.00 665.110±0.00 15.037±0.00 81.422±0.00 411.322±0.00 364.553±0.00 135.294±125.74 152.477±0.00 126.517±94.30 1101.810±0.00 356.317±0.00 611.558±511.86 152.815±0.00 135.680±83.35
ENST00000549920 N/A N/A N/A 18.671±0.00 N/A N/A N/A N/A N/A N/A 13.311±0.00 N/A N/A N/A
ENST00000550645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.910±0.00 N/A N/A
ENST00000552588 N/A N/A N/A 116.003±0.00 N/A 329.055±0.00 N/A N/A 77.082±0.00 N/A N/A N/A N/A 214.031±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029533 rpl18 ribosomal protein L18 protein_coding Danio_rerio
ENSMUSG00000059070 Rpl18 ribosomal protein L18 protein_coding Mus_musculus

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