C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549920 RPL18-001 ENSG00000063177 9606 - 19:48615328-48619536 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleENST00000549920
Transcript ID Brain Muscle
ENST00000549920 18.671±0.00 13.311±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072503 Rpl18-201 protein_coding Mus_musculus 0 797
ENSMUST00000075178 Rpl18-001 protein_coding Mus_musculus 0 797
ENSMUST00000135500 Rpl18-002 protein_coding Mus_musculus 0 712
ENSMUST00000118863 Rpl18-ps2-001 transcribed_processed_pseudogene Mus_musculus 0 682
ENSMUST00000120418 Gm13436-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000119837 Gm11539-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000119724 Gm12341-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000173098 Rpl18-007 protein_coding Mus_musculus 0 431
ENSMUST00000148510 Rpl18-003 retained_intron Mus_musculus 0 364
ENSMUST00000172506 Rpl18-008 retained_intron Mus_musculus 0 239

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