C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000549370 RPL18-009 ENSG00000063177 9606 - 19:48615336-48619176 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000549370
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000549370 397.678±0.00 665.110±0.00 15.037±0.00 81.422±0.00 411.322±0.00 364.553±0.00 135.294±125.74 152.477±0.00 126.517±94.30 1101.810±0.00 356.317±0.00 611.558±511.86 152.815±0.00 135.680±83.35

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072503 Rpl18-201 protein_coding Mus_musculus 0 739
ENSMUST00000075178 Rpl18-001 protein_coding Mus_musculus 0 739
ENSMUST00000135500 Rpl18-002 protein_coding Mus_musculus 0 676
ENSMUST00000118863 Rpl18-ps2-001 transcribed_processed_pseudogene Mus_musculus 0 647
ENSMUST00000120418 Gm13436-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000119837 Gm11539-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000119724 Gm12341-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000173098 Rpl18-007 protein_coding Mus_musculus 0 396
ENSMUST00000148510 Rpl18-003 retained_intron Mus_musculus 0 329
ENSMUST00000172506 Rpl18-008 retained_intron Mus_musculus 0 204

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