C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: strawberry notch homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361757 SBNO2-001 ENSG00000064932 9606 - 19:1107636-1174283 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361757
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361757 12.546±0.00 18.897±0.00 3.190±0.00 7.140±0.00 4.004±0.00 0.994±0.92 0.727±0.00 3.407±3.03 1.984±0.00 12.749±0.00 6.970±0.00 7.812±2.04 10.354±1.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QT CIL_0000QT_0001 CGP 19:1103926-1174283
CIL_0000QW CIL_0000QW_0001 CGP 19:1107636-1228435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002281 IMP macrophage activation involved in immune response
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0006351 IEA transcription, DNA-templated
GO:0030282 IEA bone mineralization
GO:0030316 IEA osteoclast differentiation
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050727 IMP regulation of inflammatory response
GO:0061430 IEA bone trabecula morphogenesis
GO:0072674 IEA multinuclear osteoclast differentiation
GO:0072675 IEA osteoclast fusion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042771 Sbno2-201 protein_coding Mus_musculus 0 3212
ENSDART00000113907 sbno1-201 protein_coding Danio_rerio 0 219

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