C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436427 YBX1-002 ENSG00000065978 9606 + 1:42682987-42702349 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleTestisENST00000436427
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Testis
ENST00000436427 133.367±0.00 158.351±0.00 16.395±0.00 119.583±0.00 151.636±0.00 30.659±0.00 39.357±0.00 48.850±0.00 118.216±0.00 215.298±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079644 Ybx1-001 protein_coding Mus_musculus 0 1849
ENSMUST00000127737 Ybx1-004 protein_coding Mus_musculus 0 1589
ENSMUST00000117567 Gm11560-001 processed_pseudogene Mus_musculus 0 1181
ENSMUST00000145976 Ybx1-007 processed_transcript Mus_musculus 0 758
ENSMUST00000119046 Gm15808-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000123576 E130201H02Rik-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000139897 Ybx1-003 processed_transcript Mus_musculus 0 302
ENSMUST00000144992 Ybx1-006 processed_transcript Mus_musculus 0 193

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