C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Y box binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321358 YBX1-001 ENSG00000065978 9606 + 1:42682427-42702349 protein_coding

Homo sapiens EnsemblGRCh38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321358
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321358 277.096±0.00 216.404±0.00 38.599±0.00 22.981±2.91 141.762±77.34 145.163±71.40 139.588±87.15 103.462±31.85 77.900±4.79 103.495±79.94 311.564±185.15 131.336±71.85 249.833±61.51 464.706±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PM CIL_0008PM_0001 VISTA 1:42456139-43057783

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0001701 IEA in utero embryonic development
GO:0003676 IEA nucleic acid binding
GO:0003677 IDA:IEA DNA binding
GO:0003690 TAS double-stranded DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005689 IDA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0006355 IDA:IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0010494 IDA cytoplasmic stress granule
GO:0030529 IDA ribonucleoprotein complex
GO:0031965 IDA nuclear membrane
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0051154 IEA negative regulation of striated muscle cell differentiation
GO:0051781 IEA positive regulation of cell division
GO:0070062 IDA extracellular vesicular exosome
GO:0070934 IMP CRD-mediated mRNA stabilization
GO:0070937 IDA CRD-mediated mRNA stability complex
GO:0071204 ISS histone pre-mRNA 3'end processing complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079644 Ybx1-001 protein_coding Mus_musculus 0 2399
ENSMUST00000127737 Ybx1-004 protein_coding Mus_musculus 0 1589
ENSMUST00000117567 Gm11560-001 processed_pseudogene Mus_musculus 0 1367
ENSMUST00000145976 Ybx1-007 processed_transcript Mus_musculus 0 758
ENSMUST00000123576 E130201H02Rik-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000139897 Ybx1-003 processed_transcript Mus_musculus 0 592
ENSMUST00000142884 Ybx1-005 processed_transcript Mus_musculus 0 573
ENSMUST00000152733 Ybx1-002 processed_transcript Mus_musculus 0 555
ENSMUST00000119046 Gm15808-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000144992 Ybx1-006 processed_transcript Mus_musculus 0 193

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