C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: catenin (cadherin-associated protein), alpha 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000066032 CTNNA2 9606 + 2:79185231-80648861 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343114 CTNNA2-004 80313379-80648780 protein_coding
  ENST00000361291 CTNNA2-201 80313379-80648861 protein_coding
  ENST00000402739 CTNNA2-003 79651552-80648689 protein_coding
  ENST00000409266 CTNNA2-005 79634541-79687729 protein_coding
  ENST00000409550 CTNNA2-015 80328275-80555728 protein_coding
  ENST00000409971 CTNNA2-007 79514622-79858066 protein_coding
  ENST00000451966 CTNNA2-006 79513034-79744483 protein_coding
  ENST00000465616 CTNNA2-009 80378687-80546054 processed_transcript
  ENST00000466387 CTNNA2-002 79185231-80648779 protein_coding
  ENST00000467488 CTNNA2-012 79292976-79319893 retained_intron
  ENST00000467892 CTNNA2-010 80589339-80608489 retained_intron
  ENST00000493024 CTNNA2-014 80305118-80545986 processed_transcript
  ENST00000496251 CTNNA2-011 79281464-79340163 processed_transcript
  ENST00000496558 CTNNA2-001 79513000-80648780 protein_coding
  ENST00000497804 CTNNA2-013 79312710-79340171 processed_transcript
  ENST00000508970 CTNNA2-020 79697846-79777101 processed_transcript
  ENST00000540488 CTNNA2-202 80313379-80648861 protein_coding
  ENST00000541047 CTNNA2-203 80305105-80648861 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343114ENST00000402739ENST00000466387ENST00000467892ENST00000496558ENST00000508970ENST00000540488ENST00000541047
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343114 N/A N/A N/A N/A N/A 0.008±0.00 N/A 0.012±0.00 N/A N/A N/A 0.001±0.00 N/A
ENST00000402739 N/A N/A N/A N/A N/A 0.152±0.00 N/A 0.111±0.00 N/A N/A N/A N/A 1.871±0.30
ENST00000466387 N/A N/A N/A 0.037±0.00 N/A 0.012±0.00 0.033±0.00 N/A 0.021±0.00 N/A 0.044±0.00 N/A 1.440±0.00
ENST00000467892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.175±0.00 N/A N/A
ENST00000496558 N/A N/A 34.880±8.81 N/A 0.762±0.65 N/A N/A 0.069±0.00 N/A N/A 0.043±0.00 N/A 3.963±0.00
ENST00000508970 0.088±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540488 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.115±0.00 N/A 0.016±0.01 N/A
ENST00000541047 N/A 0.016±0.00 12.095±0.00 N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.080±0.04 0.004±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NY CIL_0003NY_0001 CGP 2:79185231-80648861

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 NAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005912 ISS adherens junction
GO:0005913 IEA cell-cell adherens junction
GO:0007155 IEA cell adhesion
GO:0007409 ISS axonogenesis
GO:0015629 IEA actin cytoskeleton
GO:0016323 IEA basolateral plasma membrane
GO:0016337 ISS single organismal cell-cell adhesion
GO:0021942 ISS radial glia guided migration of Purkinje cell
GO:0030027 IEA lamellipodium
GO:0030424 ISS axon
GO:0042692 TAS muscle cell differentiation
GO:0045296 IEA cadherin binding
GO:0048813 ISS dendrite morphogenesis
GO:0048854 ISS brain morphogenesis
GO:0051015 IEA actin filament binding
GO:0051149 TAS positive regulation of muscle cell differentiation
GO:0051823 ISS regulation of synapse structural plasticity
GO:0060134 ISS prepulse inhibition

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024785 ctnna2 catenin (cadherin-associated protein), alpha 2 protein_coding Danio_rerio
ENSMUSG00000063063 Ctnna2 catenin (cadherin associated protein), alpha 2 protein_coding Mus_musculus

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