C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: catenin (cadherin-associated protein), alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541047 CTNNA2-203 ENSG00000066032 9606 + 2:80305105-80648861 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartOvaryPlacentaENST00000541047
Transcript ID Bladder Brain Heart Ovary Placenta
ENST00000541047 0.016±0.00 12.095±0.00 0.005±0.00 0.080±0.04 0.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NY CIL_0003NY_0001 CGP 2:79185231-80648861

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 NAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005912 ISS adherens junction
GO:0007155 IEA cell adhesion
GO:0007409 ISS axonogenesis
GO:0015629 IEA actin cytoskeleton
GO:0016337 ISS single organismal cell-cell adhesion
GO:0021942 ISS radial glia guided migration of Purkinje cell
GO:0030424 ISS axon
GO:0042692 TAS muscle cell differentiation
GO:0045296 IEA cadherin binding
GO:0048813 ISS dendrite morphogenesis
GO:0048854 ISS brain morphogenesis
GO:0051015 IEA actin filament binding
GO:0051149 TAS positive regulation of muscle cell differentiation
GO:0051823 ISS regulation of synapse structural plasticity
GO:0060134 ISS prepulse inhibition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161846 Ctnna2-001 protein_coding Mus_musculus 0 3061
ENSMUST00000075340 Ctnna2-201 protein_coding Mus_musculus 0 2266
ENSMUST00000159626 Ctnna2-003 protein_coding Mus_musculus 0 1851
ENSMUST00000160894 Ctnna2-002 protein_coding Mus_musculus 0 1851
ENSMUST00000162991 Ctnna2-006 retained_intron Mus_musculus 7e-24 117

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