C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: S1 RNA binding domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000068784 SRBD1 9606 - 2:45388680-45612165 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263736 SRBD1-001 45388680-45611281 protein_coding
  ENST00000461805 SRBD1-005 45601922-45612165 processed_transcript
  ENST00000475073 SRBD1-003 45418455-45549072 processed_transcript
  ENST00000490133 SRBD1-002 45388776-45448095 processed_transcript
  ENST00000493649 SRBD1-004 45546732-45568021 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263736ENST00000493649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263736 2.270±0.00 1.645±0.00 2.068±0.00 0.362±0.18 2.049±0.64 1.423±0.47 1.214±0.43 1.837±0.06 2.054±1.00 2.218±0.93 0.851±0.41 2.305±0.71 2.207±0.80 5.470±0.56
ENST00000493649 N/A N/A N/A 1.227±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KD CIL_0007KD_0001 UCNEbase 2:44450120-45456944
CIL_0000RS CIL_0000RS_0001 CGP 2:45005161-45612165
CIL_0001NP CIL_0001NP_0001 CGP 2:45388680-46187990

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0006139 IEA nucleobase-containing compound metabolic process
GO:0016788 IEA hydrolase activity, acting on ester bonds

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079827 srbd1 S1 RNA binding domain 1 protein_coding Danio_rerio
ENSMUSG00000024135 Srbd1 S1 RNA binding domain 1 protein_coding Mus_musculus

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