C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000RS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000170577-ENSG00000068784 CGP 9606 2:45005161-45612165
GeneTranscriptPositionBiotype
ENSG00000068784 (SRBD1)
S1 RNA binding domain 1 		ENST00000263736 (SRBD1-001) 45388680-45611281 protein_coding
ENST00000461805 (SRBD1-005) 45601922-45612165 processed_transcript
ENST00000475073 (SRBD1-003) 45418455-45549072 processed_transcript
ENST00000490133 (SRBD1-002) 45388776-45448095 processed_transcript
ENST00000493649 (SRBD1-004) 45546732-45568021 processed_transcript
ENSG00000170577 (SIX2)
SIX homeobox 2 		ENST00000303077 (SIX2-001) 45005161-45009430 protein_coding
ENSG00000205054 (LINC01121)
long intergenic non-protein coding RNA 1121 		ENST00000378479 (LINC01121-001) 45174344-45254941 lincRNA
ENST00000413669 (LINC01121-006) 45174340-45175211 lincRNA
ENST00000427020 (LINC01121-003) 45164870-45192265 lincRNA
ENST00000430650 (LINC01121-004) 45192179-45323295 lincRNA
ENST00000454673 (LINC01121-002) 45187170-45192285 retained_intron
ENSG00000231054 (AC009236.2)
 ENST00000442821 (AC009236.2-001) 45168583-45169414 lincRNA
ENSG00000231156 (AC093702.1)
 ENST00000423433 (AC093702.1-001) 45013214-45013668 lincRNA
ENSG00000239396 (RN7SL414P)
RNA, 7SL, cytoplasmic 414, pseudogene 		ENST00000469545 (RN7SL414P-201) 45569199-45569492 misc_RNA
CIL_0000RS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024134-ENSMUSG00000024135 CGP 10090 17:85684277-86145175
GeneTranscriptPositionBiotype
ENSMUSG00000024134 (Six2)
sine oculis-related homeobox 2 		ENSMUST00000024947 (Six2-201) 85684282-85688254 protein_coding
ENSMUST00000163568 (Six2-001) 85684277-85688274 protein_coding
ENSMUSG00000024135 (Srbd1)
S1 RNA binding domain 1 		ENSMUST00000095187 (Srbd1-201) 85984665-86145175 protein_coding
ENSMUSG00000100345 (RP23-449G13.1)
predicted gene 29418 		ENSMUST00000186162 (RP23-449G13.1-001) 85796218-85824044 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000RS_0001ENSG00000068784ENST00000263736ENST00000461805ENST00000475073ENST00000490133ENST00000493649ENSG00000170577ENST00000303077ENSG00000205054ENST00000378479ENST00000413669ENST00000427020ENST00000430650ENST00000454673ENSG00000231054ENST00000442821ENSG00000231156ENST00000423433ENSG00000239396ENST00000469545CIL_0000RS_0002ENSMUSG00000024134ENSMUST00000024947ENSMUST00000163568ENSMUSG00000024135ENSMUST00000095187ENSMUSG00000100345ENSMUST00000186162
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000RS_0001ENSG00000068784ENST00000263736ENST00000493649ENSG00000170577ENST00000303077ENSG00000205054ENST00000378479ENST00000413669ENST00000427020ENST00000430650ENST00000454673ENSG00000231054ENST00000442821ENSG00000231156ENST00000423433ENSG00000239396ENST00000469545CIL_0000RS_0002ENSMUSG00000024134ENSMUST00000024947ENSMUST00000163568ENSMUSG00000024135ENSMUST00000095187ENSMUSG00000100345ENSMUST00000186162
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000068784 ENST00000263736 2.270±0.00 1.645±0.00 2.068±0.00 0.362±0.18 2.049±0.64 1.423±0.47 1.214±0.43 1.837±0.06 2.054±1.00 2.218±0.93 0.851±0.41 2.305±0.71 2.207±0.80 5.470±0.56
ENST00000461805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493649 N/A N/A N/A 1.227±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170577 ENST00000303077 2.296±0.00 0.562±0.00 0.067±0.00 0.244±0.00 1.384±0.00 0.854±0.00 0.258±0.22 0.461±0.00 0.277±0.00 0.642±0.59 8.378±7.12 4.604±5.91 0.222±0.23 1.338±0.92
ENSG00000205054 ENST00000378479 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A 0.164±0.00 N/A N/A
ENST00000413669 N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A 0.297±0.11 N/A N/A
ENST00000427020 0.062±0.00 N/A N/A N/A N/A N/A 0.046±0.00 N/A 0.060±0.00 N/A N/A N/A 0.032±0.00 N/A
ENST00000430650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 0.367±0.31
ENST00000454673 0.045±0.00 0.148±0.00 N/A 0.101±0.00 0.066±0.04 0.085±0.03 0.031±0.02 0.097±0.00 0.032±0.00 0.149±0.00 0.012±0.00 0.015±0.01 0.021±0.00 0.080±0.00
ENSG00000231054 ENST00000442821 N/A N/A N/A 0.188±0.00 0.268±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000231156 ENST00000423433 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.741±0.00 0.480±0.00 N/A N/A 0.502±0.00
ENSG00000239396 ENST00000469545 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.407±0.00 N/A 2.694±0.00 N/A 0.116±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024134 ENSMUST00000024947 0.201±0.09 0.239±0.12 0.040±0.00 0.386±0.04 0.356±0.34 0.787±0.30 0.260±0.05 0.153±0.07 0.089±0.06 0.307±0.18 N/A 0.618±0.19 0.219±0.09 1.117±0.30
ENSMUST00000163568 0.016±0.00 N/A 0.121±0.02 0.576±0.12 N/A 0.358±0.16 0.055±0.02 N/A 0.045±0.03 0.038±0.02 9.432±0.53 0.050±0.00 0.864±1.10 1.083±0.32
ENSMUSG00000024135 ENSMUST00000095187 1.580±0.45 1.043±0.24 2.601±0.20 2.854±0.51 1.159±0.26 0.648±0.16 0.784±0.28 1.115±0.23 1.745±1.05 1.036±0.42 0.648±0.23 3.650±3.55 4.007±1.54 0.565±0.26
ENSMUSG00000100345 ENSMUST00000186162 N/A N/A N/A 0.075±0.04 N/A N/A N/A N/A 0.046±0.00 N/A 0.134±0.08 N/A 0.214±0.22 N/A

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