C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001NP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000068784-ENSG00000171132 CGP 9606 2:45388680-46187990
GeneTranscriptPositionBiotype
ENSG00000068784 (SRBD1)
S1 RNA binding domain 1 		ENST00000263736 (SRBD1-001) 45388680-45611281 protein_coding
ENST00000461805 (SRBD1-005) 45601922-45612165 processed_transcript
ENST00000475073 (SRBD1-003) 45418455-45549072 processed_transcript
ENST00000490133 (SRBD1-002) 45388776-45448095 processed_transcript
ENST00000493649 (SRBD1-004) 45546732-45568021 processed_transcript
ENSG00000171132 (PRKCE)
protein kinase C, epsilon 		ENST00000306156 (PRKCE-001) 45651774-46187990 protein_coding
ENST00000394874 (PRKCE-008) 46000902-46010964 protein_coding
ENST00000421201 (PRKCE-006) 45651345-45843034 protein_coding
ENST00000462720 (PRKCE-004) 45652360-45701491 processed_transcript
ENST00000467135 (PRKCE-002) 45676734-45845758 processed_transcript
ENST00000469753 (PRKCE-013) 46073437-46151201 processed_transcript
ENST00000472021 (PRKCE-012) 45677025-45686347 processed_transcript
ENST00000476675 (PRKCE-011) 45675619-45980356 processed_transcript
ENST00000480453 (PRKCE-010) 45652401-45984567 processed_transcript
ENST00000480633 (PRKCE-014) 46073796-46151164 processed_transcript
ENST00000485176 (PRKCE-003) 45697982-45770860 processed_transcript
ENST00000489067 (PRKCE-007) 45978095-45984681 processed_transcript
ENST00000494472 (PRKCE-016) 46151102-46160060 processed_transcript
ENST00000497602 (PRKCE-009) 45697972-45852026 processed_transcript
ENST00000498388 (PRKCE-015) 46151053-46164895 processed_transcript
ENSG00000228481 (U51244.2)
 ENST00000423120 (U51244.2-001) 45674701-45675476 antisense
ENSG00000231336 (AC017006.3)
 ENST00000450080 (AC017006.3-001) 46166789-46167978 antisense
ENSG00000232696 (AC017006.2)
 ENST00000444077 (AC017006.2-001) 46078015-46078828 antisense
ENSG00000233829 (AC017078.1)
 ENST00000416146 (AC017078.1-001) 46003942-46004309 processed_pseudogene
ENSG00000239396 (RN7SL414P)
RNA, 7SL, cytoplasmic 414, pseudogene 		ENST00000469545 (RN7SL414P-201) 45569199-45569492 misc_RNA
CIL_0001NP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024135-ENSMUSG00000045038 CGP 10090 17:85984665-86657919
GeneTranscriptPositionBiotype
ENSMUSG00000024135 (Srbd1)
S1 RNA binding domain 1 		ENSMUST00000095187 (Srbd1-201) 85984665-86145175 protein_coding
ENSMUSG00000045038 (Prkce)
protein kinase C, epsilon 		ENSMUST00000097274 (Prkce-003) 86168174-86655415 protein_coding
ENSMUST00000097275 (Prkce-001) 86167785-86657919 protein_coding
ENSMUST00000136986 (Prkce-005) 86493327-86496457 retained_intron
ENSMUST00000142003 (Prkce-002) 86167819-86177505 nonsense_mediated_decay
ENSMUST00000150486 (Prkce-004) 86490562-86496112 retained_intron
ENSMUSG00000071036 (Gm10309)
predicted gene 10309 		ENSMUST00000095186 (Gm10309-201) 86497732-86505232 protein_coding
ENSMUSG00000100738 (RP23-458O22.2)
RIKEN cDNA 2010106C02 gene 		ENSMUST00000191222 (RP23-458O22.2-001) 86285164-86287178 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NP_0001ENSG00000068784ENST00000263736ENST00000461805ENST00000475073ENST00000490133ENST00000493649ENSG00000171132ENST00000306156ENST00000394874ENST00000421201ENST00000462720ENST00000467135ENST00000469753ENST00000472021ENST00000476675ENST00000480453ENST00000480633ENST00000485176ENST00000489067ENST00000494472ENST00000497602ENST00000498388ENSG00000228481ENST00000423120ENSG00000231336ENST00000450080ENSG00000232696ENST00000444077ENSG00000233829ENST00000416146ENSG00000239396ENST00000469545CIL_0001NP_0002ENSMUSG00000024135ENSMUST00000095187ENSMUSG00000045038ENSMUST00000097274ENSMUST00000097275ENSMUST00000136986ENSMUST00000142003ENSMUST00000150486ENSMUSG00000071036ENSMUST00000095186ENSMUSG00000100738ENSMUST00000191222
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NP_0001ENSG00000068784ENST00000263736ENST00000493649ENSG00000171132ENST00000306156ENST00000394874ENST00000421201ENST00000467135ENST00000480453ENSG00000228481ENST00000423120ENSG00000231336ENST00000450080ENSG00000232696ENST00000444077ENSG00000233829ENST00000416146ENSG00000239396ENST00000469545CIL_0001NP_0002ENSMUSG00000024135ENSMUST00000095187ENSMUSG00000045038ENSMUST00000097274ENSMUST00000097275ENSMUSG00000071036ENSMUST00000095186ENSMUSG00000100738ENSMUST00000191222
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000068784 ENST00000263736 2.270±0.00 1.645±0.00 2.068±0.00 0.362±0.18 2.049±0.64 1.423±0.47 1.214±0.43 1.837±0.06 2.054±1.00 2.218±0.93 0.851±0.41 2.305±0.71 2.207±0.80 5.470±0.56
ENST00000461805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493649 N/A N/A N/A 1.227±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171132 ENST00000306156 1.728±0.00 1.000±0.00 1.390±0.00 13.264±3.49 1.236±0.31 2.132±0.89 0.446±0.15 1.286±0.00 2.200±0.51 7.467±2.29 0.377±0.13 1.133±0.47 1.788±0.04 1.005±0.00
ENST00000394874 N/A N/A N/A N/A N/A N/A N/A 0.930±0.00 N/A N/A N/A 1.580±0.00 N/A 7.238±0.00
ENST00000421201 N/A N/A N/A N/A N/A N/A N/A 1.410±0.00 N/A N/A N/A N/A N/A N/A
ENST00000462720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.772±0.61
ENST00000469753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480453 N/A N/A N/A N/A N/A N/A N/A N/A 8.570±0.00 N/A N/A N/A N/A N/A
ENST00000480633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228481 ENST00000423120 N/A N/A N/A N/A 0.111±0.00 3.037±0.00 N/A 0.258±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000231336 ENST00000450080 0.229±0.00 0.369±0.00 N/A 0.279±0.00 0.326±0.00 0.179±0.00 0.466±0.00 0.508±0.00 0.055±0.00 0.304±0.00 N/A N/A N/A 0.422±0.03
ENSG00000232696 ENST00000444077 0.120±0.00 0.091±0.00 0.312±0.00 0.126±0.00 0.255±0.00 0.233±0.00 0.345±0.00 0.268±0.00 0.306±0.00 0.405±0.00 N/A 0.487±0.20 0.058±0.00 0.114±0.00
ENSG00000233829 ENST00000416146 N/A N/A N/A 0.081±0.00 0.901±0.00 0.330±0.00 N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A
ENSG00000239396 ENST00000469545 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.407±0.00 N/A 2.694±0.00 N/A 0.116±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024135 ENSMUST00000095187 1.580±0.45 1.043±0.24 2.601±0.20 2.854±0.51 1.159±0.26 0.648±0.16 0.784±0.28 1.115±0.23 1.745±1.05 1.036±0.42 0.648±0.23 3.650±3.55 4.007±1.54 0.565±0.26
ENSMUSG00000045038 ENSMUST00000097274 1.164±0.13 1.202±0.14 N/A 58.603±0.00 0.963±0.22 1.488±0.49 0.605±0.02 0.801±0.12 0.304±0.19 2.690±0.36 N/A 1.419±0.88 6.442±1.14 0.225±0.06
ENSMUST00000097275 2.187±0.81 0.974±0.16 2.080±1.19 17.316±13.97 1.365±0.45 1.269±0.25 0.756±0.29 1.664±1.02 0.372±0.25 3.745±1.75 2.193±0.21 1.569±0.93 2.812±1.93 0.200±0.05
ENSMUST00000136986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142003 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000071036 ENSMUST00000095186 0.136±0.05 0.157±0.10 0.076±0.00 0.127±0.00 0.251±0.12 0.075±0.01 0.053±0.02 0.087±0.03 0.022±0.02 0.414±0.08 0.055±0.03 0.132±0.09 0.171±0.20 2.423±1.02
ENSMUSG00000100738 ENSMUST00000191222 0.086±0.01 0.149±0.08 N/A N/A 0.204±0.06 0.589±0.23 0.077±0.03 0.137±0.09 0.183±0.15 0.306±0.13 N/A 0.208±0.11 N/A 0.186±0.00

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