C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclic nucleotide gated channel beta 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070729 CNGB1 9606 - 16:57882340-57971116 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000251102 CNGB1-001 57882340-57971112 protein_coding
  ENST00000311183 CNGB1-002 57954675-57971116 protein_coding
  ENST00000562761 CNGB1-004 57960006-57967352 protein_coding
  ENST00000564448 CNGB1-003 57883599-57971112 protein_coding
  ENST00000564450 CNGB1-007 57923113-57939549 retained_intron
  ENST00000564654 CNGB1-006 57931765-57946625 processed_transcript
  ENST00000565942 CNGB1-008 57884368-57901373 protein_coding
  ENST00000567568 CNGB1-005 57963925-57971109 retained_intron
  ENST00000569643 CNGB1-009 57897856-57911901 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000251102ENST00000311183ENST00000562761ENST00000564448ENST00000564450ENST00000564654ENST00000565942ENST00000569643
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000251102 N/A 0.026±0.00 N/A 0.004±0.00 0.009±0.00 0.014±0.00 N/A N/A 0.074±0.05 0.235±0.00 N/A
ENST00000311183 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A 0.053±0.00 0.166±0.00 0.099±0.04
ENST00000562761 N/A N/A N/A N/A 0.059±0.00 N/A N/A 0.479±0.00 N/A N/A N/A
ENST00000564448 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A 0.029±0.00
ENST00000564450 N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A
ENST00000564654 N/A N/A 0.469±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565942 N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 0.530±0.00 N/A N/A
ENST00000569643 N/A N/A N/A N/A N/A N/A N/A N/A 0.686±0.00 0.710±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S0 CIL_0004S0_0001 CGP 16:57758217-57971116
CIL_0008Z0 CIL_0008Z0_0001 VISTA 16:57818949-58421282
CIL_0004RZ CIL_0004RZ_0001 CGP 16:57882340-57988116

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001895 IMP retina homeostasis
GO:0005222 IEA intracellular cAMP activated cation channel activity
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IBA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006812 IDA cation transport
GO:0007601 TAS visual perception
GO:0007602 IEA phototransduction
GO:0007603 TAS phototransduction, visible light
GO:0007608 IEA sensory perception of smell
GO:0015276 TAS ligand-gated ion channel activity
GO:0016020 IEA membrane
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0017071 IEA intracellular cyclic nucleotide activated cation channel complex
GO:0022400 TAS regulation of rhodopsin mediated signaling pathway
GO:0030552 IEA cAMP binding
GO:0030553 IBA cGMP binding
GO:0033365 IEA protein localization to organelle
GO:0042391 IBA regulation of membrane potential
GO:0043195 IEA terminal bouton
GO:0043855 IEA cyclic nucleotide-gated ion channel activity
GO:0045494 IEA photoreceptor cell maintenance
GO:0050908 IMP detection of light stimulus involved in visual perception
GO:0051290 IEA protein heterotetramerization
GO:0051480 IEA cytosolic calcium ion homeostasis
GO:0071805 IBA potassium ion transmembrane transport
GO:1902495 IDA transmembrane transporter complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042107 CNGB1 (1 of 2) cyclic nucleotide gated channel beta 1 protein_coding Danio_rerio
ENSDARG00000068242 cngb1a cyclic nucleotide gated channel beta 1a protein_coding Danio_rerio
ENSMUSG00000031789 Cngb1 cyclic nucleotide gated channel beta 1 protein_coding Mus_musculus

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