C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclic nucleotide gated channel beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000251102 CNGB1-001 ENSG00000070729 9606 - 16:57882340-57971112 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyOvaryPlacentaENST00000251102
Transcript ID Adrenal Breast Heart Kidney Ovary Placenta
ENST00000251102 0.026±0.00 0.004±0.00 0.009±0.00 0.014±0.00 0.074±0.05 0.235±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S0 CIL_0004S0_0001 CGP 16:57758217-57971116
CIL_0008Z0 CIL_0008Z0_0001 VISTA 16:57818949-58421282
CIL_0004RZ CIL_0004RZ_0001 CGP 16:57882340-57988116

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001895 IMP retina homeostasis
GO:0005222 IEA intracellular cAMP activated cation channel activity
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IBA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006812 IDA cation transport
GO:0007601 TAS visual perception
GO:0007602 IEA phototransduction
GO:0007603 TAS phototransduction, visible light
GO:0007608 IEA sensory perception of smell
GO:0015276 TAS ligand-gated ion channel activity
GO:0016020 IEA membrane
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0017071 IEA intracellular cyclic nucleotide activated cation channel complex
GO:0022400 TAS regulation of rhodopsin mediated signaling pathway
GO:0030552 IEA cAMP binding
GO:0030553 IBA cGMP binding
GO:0033365 IEA protein localization to organelle
GO:0042391 IBA regulation of membrane potential
GO:0043195 IEA terminal bouton
GO:0043855 IEA cyclic nucleotide-gated ion channel activity
GO:0045494 IEA photoreceptor cell maintenance
GO:0050908 IMP detection of light stimulus involved in visual perception
GO:0051290 IEA protein heterotetramerization
GO:0051480 IEA cytosolic calcium ion homeostasis
GO:0071805 IBA potassium ion transmembrane transport
GO:1902495 IDA transmembrane transporter complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119870 Cngb1-001 protein_coding Mus_musculus 0 2309
ENSMUST00000121162 Cngb1-003 protein_coding Mus_musculus 0 2307
ENSMUST00000120044 Cngb1-002 protein_coding Mus_musculus 0 2307

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