C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclic nucleotide gated channel beta 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031789 Cngb1 10090 - 8:95239045-95306585 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000093268 Cngb1-004 95290593-95306585 protein_coding
  ENSMUST00000119870 Cngb1-001 95239045-95306585 protein_coding
  ENSMUST00000120044 Cngb1-002 95240981-95281590 protein_coding
  ENSMUST00000121162 Cngb1-003 95240987-95281610 protein_coding
  ENSMUST00000133716 Cngb1-006 95290593-95303837 retained_intron
  ENSMUST00000134207 Cngb1-007 95290593-95303837 retained_intron
  ENSMUST00000156514 Cngb1-005 95290596-95306570 retained_intron
  ENSMUST00000184103 Cngb1-008 95290593-95294074 protein_coding
  ENSMUST00000184621 Cngb1-009 95290593-95293669 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093268ENSMUST00000119870ENSMUST00000120044ENSMUST00000121162ENSMUST00000184103ENSMUST00000184621
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.767±0.17
ENSMUST00000119870 0.070±0.02 0.019±0.00 N/A N/A 0.061±0.00 0.034±0.01 0.065±0.00 0.027±0.01 0.006±0.00 0.069±0.04 0.052±0.03 0.206±0.07 0.010±0.00 0.331±0.13
ENSMUST00000120044 0.113±0.00 0.263±0.01 N/A 0.015±0.00 0.094±0.02 0.077±0.03 0.062±0.00 0.041±0.02 N/A 0.098±0.07 0.055±0.03 0.244±0.06 0.032±0.00 0.293±0.00
ENSMUST00000121162 N/A 0.074±0.02 N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A N/A N/A N/A 0.255±0.03
ENSMUST00000184103 0.794±0.31 0.126±0.00 0.684±0.09 0.108±0.00 0.448±0.17 0.126±0.00 0.236±0.01 0.234±0.13 0.178±0.11 0.724±0.16 0.243±0.10 2.416±1.75 0.134±0.00 1.787±0.00
ENSMUST00000184621 N/A 0.328±0.00 N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A 0.973±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S0 CIL_0004S0_0002 CGP 8:95099832-95306585
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_0004RZ CIL_0004RZ_0002 CGP 8:95239045-95326323

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001895 IEA retina homeostasis
GO:0005222 IBA intracellular cAMP activated cation channel activity
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0005887 IBA integral component of plasma membrane
GO:0006812 IEA cation transport
GO:0007602 IMP phototransduction
GO:0007603 IBA phototransduction, visible light
GO:0007608 IMP sensory perception of smell
GO:0016020 IDA membrane
GO:0017071 IEA intracellular cyclic nucleotide activated cation channel complex
GO:0030553 IBA cGMP binding
GO:0033365 IMP protein localization to organelle
GO:0042391 IBA regulation of membrane potential
GO:0043195 IEA terminal bouton
GO:0043855 IMP cyclic nucleotide-gated ion channel activity
GO:0045494 IMP photoreceptor cell maintenance
GO:0050908 IEA detection of light stimulus involved in visual perception
GO:0051290 IEA protein heterotetramerization
GO:0051480 IEA cytosolic calcium ion homeostasis
GO:0071805 IBA potassium ion transmembrane transport
GO:1902495 IEA transmembrane transporter complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042107 CNGB1 (1 of 2) cyclic nucleotide gated channel beta 1 protein_coding Danio_rerio
ENSDARG00000068242 cngb1a cyclic nucleotide gated channel beta 1a protein_coding Danio_rerio
ENSG00000070729 CNGB1 cyclic nucleotide gated channel beta 1 protein_coding Homo_sapiens

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