C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclic nucleotide gated channel beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564448 CNGB1-003 ENSG00000070729 9606 - 16:57883599-57971112 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverTestisENST00000564448
Transcript ID Liver Testis
ENST00000564448 0.010±0.00 0.029±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004S0 CIL_0004S0_0001 CGP 16:57758217-57971116
CIL_0008Z0 CIL_0008Z0_0001 VISTA 16:57818949-58421282
CIL_0004RZ CIL_0004RZ_0001 CGP 16:57882340-57988116

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001895 IMP retina homeostasis
GO:0005223 IBA intracellular cGMP activated cation channel activity
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IBA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006812 IDA cation transport
GO:0007601 TAS visual perception
GO:0007603 TAS phototransduction, visible light
GO:0007608 IEA sensory perception of smell
GO:0015276 TAS ligand-gated ion channel activity
GO:0016056 TAS rhodopsin mediated signaling pathway
GO:0022400 TAS regulation of rhodopsin mediated signaling pathway
GO:0030552 IEA cAMP binding
GO:0030553 IBA cGMP binding
GO:0042391 IBA regulation of membrane potential
GO:0050908 IMP detection of light stimulus involved in visual perception
GO:0071805 IBA potassium ion transmembrane transport
GO:1902495 IDA transmembrane transporter complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119870 Cngb1-001 protein_coding Mus_musculus 0 2309
ENSMUST00000121162 Cngb1-003 protein_coding Mus_musculus 0 2307
ENSMUST00000120044 Cngb1-002 protein_coding Mus_musculus 0 2307

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