C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Treacher Collins-Franceschetti syndrome 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070814 TCOF1 9606 + 5:150357639-150400308 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323668 TCOF1-001 150357672-150400308 protein_coding
  ENST00000377797 TCOF1-201 150357639-150400307 protein_coding
  ENST00000394269 TCOF1-004 150357718-150384249 protein_coding
  ENST00000427724 TCOF1-015 150357719-150398369 protein_coding
  ENST00000439160 TCOF1-002 150357714-150400042 protein_coding
  ENST00000445265 TCOF1-003 150357666-150400292 protein_coding
  ENST00000504761 TCOF1-014 150357747-150399048 protein_coding
  ENST00000506063 TCOF1-009 150378610-150379644 processed_transcript
  ENST00000506630 TCOF1-013 150389947-150392891 retained_intron
  ENST00000506767 TCOF1-012 150379276-150391795 nonsense_mediated_decay
  ENST00000513346 TCOF1-008 150357747-150399966 protein_coding
  ENST00000513538 TCOF1-010 150379656-150384253 protein_coding
  ENST00000514442 TCOF1-007 150374734-150394916 retained_intron
  ENST00000515035 TCOF1-006 150367573-150380859 retained_intron
  ENST00000515516 TCOF1-011 150357783-150399881 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323668ENST00000377797ENST00000394269ENST00000427724ENST00000439160ENST00000445265ENST00000504761ENST00000506767ENST00000513346ENST00000515516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323668 N/A 3.121±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.076±0.00 0.456±0.00 N/A N/A
ENST00000377797 1.743±0.00 N/A N/A N/A 0.832±0.50 N/A 0.847±0.00 1.596±0.00 0.543±0.00 2.020±0.00 N/A 6.466±2.91 3.176±0.00 5.158±0.00
ENST00000394269 N/A N/A 0.350±0.00 1.622±0.00 N/A 1.478±0.00 0.529±0.00 0.526±0.00 0.721±0.00 N/A N/A 3.603±0.00 2.856±0.00 N/A
ENST00000427724 N/A N/A N/A N/A 0.687±0.00 0.802±0.00 0.177±0.00 N/A 0.834±0.00 0.977±0.00 0.521±0.00 3.156±2.17 2.574±0.52 3.099±0.00
ENST00000439160 N/A N/A N/A 2.344±0.00 2.073±0.00 N/A 0.969±0.00 2.648±0.00 N/A 0.852±0.54 N/A N/A N/A 4.289±0.00
ENST00000445265 5.874±0.00 5.669±0.00 0.163±0.00 2.324±2.07 4.674±0.00 4.036±0.00 2.609±0.00 3.115±0.00 1.463±0.00 3.548±0.00 4.441±4.35 6.411±1.68 5.136±2.11 5.087±3.45
ENST00000504761 N/A N/A N/A 0.317±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.683±0.00
ENST00000506767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.207±0.00 N/A N/A N/A
ENST00000513346 1.747±0.00 2.740±0.00 N/A N/A N/A N/A 1.375±0.00 0.216±0.00 N/A 0.191±0.00 N/A N/A 1.444±0.00 1.516±0.00
ENST00000515516 N/A N/A N/A N/A N/A 13.729±0.00 N/A N/A N/A N/A N/A 5.647±0.00 3.086±0.00 3.503±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0001 VISTA 5:150006686-150608670

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0005215 TAS transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006810 IEA transport
GO:0042790 IEA transcription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000024613 Tcof1 Treacher Collins Franceschetti syndrome 1, homolog protein_coding Mus_musculus

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