C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Treacher Collins Franceschetti syndrome 1, homolog
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024613 Tcof1 10090 - 18:60813755-60848971 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000163446 Tcof1-003 60815997-60848959 nonsense_mediated_decay
  ENSMUST00000175934 Tcof1-005 60813755-60848929 protein_coding
  ENSMUST00000176088 Tcof1-008 60828067-60829027 retained_intron
  ENSMUST00000176630 Tcof1-001 60813755-60848971 protein_coding
  ENSMUST00000177172 Tcof1-004 60818030-60848918 protein_coding
  ENSMUST00000177343 Tcof1-007 60838683-60848446 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163446ENSMUST00000175934ENSMUST00000176630ENSMUST00000177172
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163446 N/A N/A N/A 1.084±0.00 N/A N/A N/A N/A 0.154±0.00 N/A 1.551±0.60 0.655±0.00 N/A N/A
ENSMUST00000175934 1.744±0.63 0.432±0.07 2.523±0.00 2.417±0.13 1.575±0.75 1.437±0.56 0.713±0.15 0.812±0.23 1.873±1.38 0.845±0.34 2.243±0.97 2.870±1.67 5.854±5.51 2.538±0.29
ENSMUST00000176630 2.592±0.71 1.882±0.22 3.868±0.07 3.078±1.00 2.086±1.24 1.947±1.03 1.594±0.65 2.002±0.46 1.985±1.66 1.792±0.17 2.823±1.08 3.169±1.14 4.177±2.40 0.554±0.10
ENSMUST00000177172 0.789±0.28 0.866±0.36 N/A N/A 1.267±0.11 0.824±0.21 0.637±0.00 N/A 0.446±0.00 0.737±0.00 1.113±0.00 1.158±0.27 N/A 0.573±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0002 VISTA 18:60604549-61207221

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006810 IEA transport
GO:0042790 IMP transcription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000070814 TCOF1 Treacher Collins-Franceschetti syndrome 1 protein_coding Homo_sapiens

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