C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Treacher Collins-Franceschetti syndrome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000445265 TCOF1-003 ENSG00000070814 9606 + 5:150357666-150400292 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000445265
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000445265 5.874±0.00 5.669±0.00 0.163±0.00 2.324±2.07 4.674±0.00 4.036±0.00 2.609±0.00 3.115±0.00 1.463±0.00 3.548±0.00 4.441±4.35 6.411±1.68 5.136±2.11 5.087±3.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0001 VISTA 5:150006686-150608670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0005215 TAS transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006810 IEA transport
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163446 Tcof1-003 nonsense_mediated_decay Mus_musculus 0 448
ENSMUST00000176630 Tcof1-001 protein_coding Mus_musculus 0 448
ENSMUST00000175934 Tcof1-005 protein_coding Mus_musculus 0 444
ENSMUST00000177172 Tcof1-004 protein_coding Mus_musculus 0 435
ENSMUST00000177343 Tcof1-007 protein_coding Mus_musculus 0 243
ENSMUST00000176088 Tcof1-008 retained_intron Mus_musculus 0.000000000000002 90

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