C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM and cysteine-rich domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000071282 LMCD1 9606 + 3:8501707-8568125 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000157600 LMCD1-001 8501707-8568119 protein_coding
  ENST00000397386 LMCD1-201 8501807-8568125 protein_coding
  ENST00000415597 LMCD1-004 8501823-8548863 protein_coding
  ENST00000426878 LMCD1-006 8537183-8550449 protein_coding
  ENST00000454244 LMCD1-002 8501858-8567621 protein_coding
  ENST00000456506 LMCD1-003 8501888-8567764 nonsense_mediated_decay
  ENST00000470776 LMCD1-005 8501825-8537518 retained_intron
  ENST00000535732 LMCD1-202 8501807-8551272 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000157600ENST00000397386ENST00000415597ENST00000454244ENST00000456506ENST00000470776ENST00000535732
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000157600 47.315±0.00 16.708±0.00 1.039±0.00 2.433±1.75 26.176±22.20 6.704±4.10 10.880±0.00 13.371±0.00 5.650±5.50 45.806±34.89 49.832±25.66 16.509±11.55 25.454±8.13 10.648±7.71
ENST00000397386 N/A N/A 1.260±0.00 N/A N/A N/A N/A N/A 0.925±0.00 N/A N/A N/A N/A N/A
ENST00000415597 N/A N/A N/A 0.848±0.00 N/A N/A N/A 0.868±0.00 0.407±0.00 N/A N/A 4.880±0.00 21.992±0.00 1.748±0.00
ENST00000454244 N/A N/A N/A 0.483±0.00 N/A N/A N/A N/A N/A N/A N/A 7.424±0.00 12.943±0.00 3.225±0.00
ENST00000456506 N/A N/A N/A N/A N/A N/A N/A 0.490±0.00 N/A N/A N/A N/A N/A N/A
ENST00000470776 N/A N/A N/A 1.743±0.00 N/A N/A 1.791±0.00 2.016±0.00 N/A N/A N/A N/A N/A N/A
ENST00000535732 N/A N/A N/A N/A N/A 0.651±0.00 0.601±0.00 N/A N/A 15.712±0.00 N/A 1.191±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AB CIL_0003AB_0001 CGP 3:6770001-8568125
CIL_000001 CIL_000001_0001 CGP 3:8501707-8745040

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 ISS transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010611 IMP regulation of cardiac muscle hypertrophy
GO:0031012 IDA extracellular matrix
GO:0070886 IMP positive regulation of calcineurin-NFAT signaling cascade

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002002 lmcd1 LIM and cysteine-rich domains 1 protein_coding Danio_rerio
ENSMUSG00000057604 Lmcd1 LIM and cysteine-rich domains 1 protein_coding Mus_musculus

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