C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and cysteine-rich domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000157600 LMCD1-001 ENSG00000071282 9606 + 3:8501707-8568119 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000157600
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000157600 47.315±0.00 16.708±0.00 1.039±0.00 2.433±1.75 26.176±22.20 6.704±4.10 10.880±0.00 13.371±0.00 5.650±5.50 45.806±34.89 49.832±25.66 16.509±11.55 25.454±8.13 10.648±7.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AB CIL_0003AB_0001 CGP 3:6770001-8568125
CIL_000001 CIL_000001_0001 CGP 3:8501707-8745040

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 ISS transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010611 IMP regulation of cardiac muscle hypertrophy
GO:0031012 IDA extracellular matrix
GO:0070886 IMP positive regulation of calcineurin-NFAT signaling cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032376 Lmcd1-001 protein_coding Mus_musculus 0 1380

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