C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage and polyadenylation specific factor 1, 160kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000071894 CPSF1 9606 - 8:144393229-144409349 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000526271 CPSF1-005 144393699-144394716 retained_intron
  ENST00000527827 CPSF1-009 144396015-144396730 retained_intron
  ENST00000527916 CPSF1-011 144398523-144399346 retained_intron
  ENST00000529288 CPSF1-007 144395313-144395979 retained_intron
  ENST00000531042 CPSF1-015 144394769-144409181 nonsense_mediated_decay
  ENST00000531480 CPSF1-010 144393229-144394416 retained_intron
  ENST00000531727 CPSF1-012 144393229-144394441 protein_coding
  ENST00000532560 CPSF1-006 144399800-144400986 retained_intron
  ENST00000532725 CPSF1-004 144393565-144394237 retained_intron
  ENST00000532935 CPSF1-013 144393883-144394761 protein_coding
  ENST00000533492 CPSF1-008 144399220-144399807 retained_intron
  ENST00000616140 CPSF1-201 144393231-144409349 protein_coding
  ENST00000620219 CPSF1-001 144393318-144409288 protein_coding
  ENST00000622776 CPSF1-003 144399809-144401675 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000526271ENST00000527916ENST00000531042ENST00000532935ENST00000616140ENST00000620219
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000526271 N/A N/A N/A 1.387±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527916 N/A N/A 1.888±0.00 N/A N/A 5.447±0.00 N/A N/A N/A N/A N/A 4.550±0.00 N/A N/A
ENST00000531042 N/A N/A 1.304±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.815±0.00 N/A N/A N/A
ENST00000616140 5.977±0.00 N/A 0.953±0.00 0.280±0.00 3.557±2.92 5.524±4.70 1.695±0.92 2.120±0.71 1.102±0.00 3.745±0.00 14.591±0.00 20.299±10.63 14.195±1.52 28.332±5.51
ENST00000620219 6.116±0.00 12.762±0.00 N/A 2.843±2.04 3.967±1.39 2.266±0.46 2.925±0.00 2.261±1.58 3.211±1.96 3.050±2.10 0.455±0.00 9.529±0.00 N/A 14.193±2.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_0006LZ CIL_0006LZ_0002 CGP 8:144373101-144409349
CIL_00026S CIL_00026S_0001 CGP 8:144393229-144416895

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005847 IDA mRNA cleavage and polyadenylation specificity factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 IDA mRNA polyadenylation
GO:0006379 IDA mRNA cleavage
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034178 cpsf1 cleavage and polyadenylation specific factor 1 protein_coding Danio_rerio
ENSMUSG00000034022 Cpsf1 cleavage and polyadenylation specific factor 1 protein_coding Mus_musculus

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