C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage and polyadenylation specific factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034022 Cpsf1 10090 - 15:76595809-76607591 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000071898 Cpsf1-201 76595809-76607591 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071898 25.224±7.79 39.878±1.63 20.338±0.97 28.419±8.65 26.191±6.31 26.221±1.58 11.129±0.84 18.175±1.79 19.056±3.19 26.046±1.78 6.590±0.65 36.250±7.62 16.259±3.30 20.374±5.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0002 VISTA 15:76102685-76704351
CIL_0006LZ CIL_0006LZ_0003 CGP 15:76576358-76607591
CIL_00026S CIL_00026S_0002 CGP 15:76595809-76616852

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003730 IEA mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005847 ISS mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 IEA mRNA polyadenylation
GO:0006379 IEA mRNA cleavage

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034178 cpsf1 cleavage and polyadenylation specific factor 1 protein_coding Danio_rerio
ENSG00000071894 CPSF1 cleavage and polyadenylation specific factor 1, 160kDa protein_coding Homo_sapiens

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