C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000072042 RDH11 9606 - 14:67676801-67695814 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000381346 RDH11-001 67676801-67695814 protein_coding
  ENST00000428130 RDH11-004 67678034-67695733 protein_coding
  ENST00000553384 RDH11-003 67677364-67695754 protein_coding
  ENST00000553578 RDH11-006 67677393-67692851 retained_intron
  ENST00000553816 RDH11-012 67684510-67695717 retained_intron
  ENST00000554035 RDH11-013 67678087-67692483 protein_coding
  ENST00000554731 RDH11-009 67678073-67695766 nonsense_mediated_decay
  ENST00000556692 RDH11-007 67692416-67695793 retained_intron
  ENST00000557273 RDH11-011 67685073-67695730 protein_coding
  ENST00000557331 RDH11-008 67690275-67695774 nonsense_mediated_decay
  ENST00000557726 RDH11-010 67685153-67695764 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000381346ENST00000553384ENST00000553578
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000381346 11.275±0.00 16.437±0.00 6.815±0.00 21.119±11.10 7.224±3.15 15.899±0.00 5.116±0.00 34.705±21.57 20.879±15.24 9.771±4.94 12.750±6.54 8.442±1.03 23.941±0.00
ENST00000553384 N/A N/A N/A 9.969±0.00 5.143±0.00 N/A N/A 11.652±0.00 14.837±7.00 14.345±0.00 8.040±3.62 12.576±0.00 17.764±0.00
ENST00000553578 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.387±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CM CIL_0002CM_0001 CGP 14:67676801-67734452

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001917 IEA photoreceptor inner segment
GO:0003824 IEA catalytic activity
GO:0004745 ISS retinol dehydrogenase activity
GO:0005622 ISS intracellular
GO:0005789 TAS endoplasmic reticulum membrane
GO:0007603 TAS phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016062 IEA adaptation of rhodopsin mediated signaling
GO:0016491 IEA oxidoreductase activity
GO:0042572 ISS retinol metabolic process
GO:0042574 IDA retinal metabolic process
GO:0050662 IEA coenzyme binding
GO:0052650 IDA NADP-retinol dehydrogenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018069 rdh12 retinol dehydrogenase 12 (all-trans and 9-cis) protein_coding Danio_rerio
ENSMUSG00000066441 Rdh11 retinol dehydrogenase 11 protein_coding Mus_musculus

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