C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000553384 RDH11-003 ENSG00000072042 9606 - 14:67677364-67695754 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLiverLungOvaryPlacentaTestisENST00000553384
Transcript ID Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENST00000553384 9.969±0.00 5.143±0.00 11.652±0.00 14.837±7.00 14.345±0.00 8.040±3.62 12.576±0.00 17.764±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CM CIL_0002CM_0001 CGP 14:67676801-67734452

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0004745 ISS retinol dehydrogenase activity
GO:0005622 ISS intracellular
GO:0005789 TAS endoplasmic reticulum membrane
GO:0007603 TAS phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0042572 ISS retinol metabolic process
GO:0042574 IDA retinal metabolic process
GO:0052650 IDA NADP-retinol dehydrogenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021548 Rdh12-001 protein_coding Mus_musculus 0 195
ENSMUST00000140823 Rdh12-004 protein_coding Mus_musculus 1e-39 169
ENSMUST00000151980 Rdh12-002 retained_intron Mus_musculus 3e-30 137
ENSMUST00000161204 Rdh11-001 protein_coding Mus_musculus 4e-19 100
ENSMUST00000085254 Rdh11-002 protein_coding Mus_musculus 3e-16 92

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