C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381346 RDH11-001 ENSG00000072042 9606 - 14:67676801-67695814 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000381346
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000381346 11.275±0.00 16.437±0.00 6.815±0.00 21.119±11.10 7.224±3.15 15.899±0.00 5.116±0.00 34.705±21.57 20.879±15.24 9.771±4.94 12.750±6.54 8.442±1.03 23.941±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CM CIL_0002CM_0001 CGP 14:67676801-67734452

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0001917 IEA photoreceptor inner segment
GO:0003824 IEA catalytic activity
GO:0004745 ISS retinol dehydrogenase activity
GO:0005622 ISS intracellular
GO:0005789 TAS endoplasmic reticulum membrane
GO:0007603 TAS phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016062 IEA adaptation of rhodopsin mediated signaling
GO:0016491 IEA oxidoreductase activity
GO:0042572 ISS retinol metabolic process
GO:0042574 IDA retinal metabolic process
GO:0050662 IEA coenzyme binding
GO:0052650 IDA NADP-retinol dehydrogenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161204 Rdh11-001 protein_coding Mus_musculus 0 845
ENSMUST00000085254 Rdh11-002 protein_coding Mus_musculus 0 835
ENSMUST00000021548 Rdh12-001 protein_coding Mus_musculus 0 263
ENSMUST00000140823 Rdh12-004 protein_coding Mus_musculus 0 237
ENSMUST00000151980 Rdh12-002 retained_intron Mus_musculus 5e-30 137

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