C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retinol dehydrogenase 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000066441 Rdh11 10090 - 12:79174337-79192293 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000085254 Rdh11-002 79175551-79190961 protein_coding
  ENSMUST00000159500 Rdh11-003 79176165-79191793 nonsense_mediated_decay
  ENSMUST00000161204 Rdh11-001 79174337-79192293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085254ENSMUST00000159500ENSMUST00000161204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085254 1.593±0.27 1.056±0.19 2.137±0.15 2.571±0.52 1.735±0.54 1.738±0.72 0.410±0.04 2.008±0.69 7.485±2.34 2.086±0.91 0.735±0.15 4.155±2.85 6.191±1.96 36.276±5.42
ENSMUST00000159500 2.921±0.47 3.701±1.54 N/A N/A 2.823±1.62 2.800±0.91 0.527±0.09 3.763±0.80 11.496±2.67 2.347±0.39 0.738±0.00 7.147±0.99 N/A N/A
ENSMUST00000161204 3.771±0.63 3.049±0.70 4.896±0.81 4.868±1.04 2.838±0.95 2.164±0.31 0.654±0.07 3.604±0.41 15.652±5.72 3.064±0.35 0.498±0.16 4.375±1.00 7.315±7.97 30.182±7.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MK CIL_0001MK_0002 CGP 12:79156017-79192293
CIL_0002CM CIL_0002CM_0002 CGP 12:79174337-79222665

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001917 IDA photoreceptor inner segment
GO:0004745 ISS retinol dehydrogenase activity
GO:0005622 ISS intracellular
GO:0005783 IEA endoplasmic reticulum
GO:0016021 IEA integral component of membrane
GO:0016062 IMP adaptation of rhodopsin mediated signaling
GO:0042572 ISO retinol metabolic process
GO:0042574 ISO retinal metabolic process
GO:0052650 ISO NADP-retinol dehydrogenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018069 rdh12 retinol dehydrogenase 12 (all-trans and 9-cis) protein_coding Danio_rerio
ENSG00000072042 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) protein_coding Homo_sapiens

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