C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transferrin receptor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000072274 TFRC 9606 - 3:196027183-196082189 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360110 TFRC-001 196049284-196082189 protein_coding
  ENST00000392396 TFRC-002 196049476-196082090 protein_coding
  ENST00000420415 TFRC-003 196049284-196082094 protein_coding
  ENST00000421258 TFRC-005 196071440-196082096 nonsense_mediated_decay
  ENST00000426789 TFRC-015 196027183-196055214 protein_coding
  ENST00000463047 TFRC-014 196053492-196055561 retained_intron
  ENST00000463356 TFRC-016 196057962-196060249 processed_transcript
  ENST00000464011 TFRC-006 196074197-196082090 processed_transcript
  ENST00000464368 TFRC-008 196062391-196065550 retained_intron
  ENST00000465288 TFRC-009 196058283-196063424 processed_transcript
  ENST00000475593 TFRC-011 196053509-196062975 retained_intron
  ENST00000477148 TFRC-010 196058326-196063192 retained_intron
  ENST00000482479 TFRC-013 196058211-196058958 retained_intron
  ENST00000483983 TFRC-012 196055111-196060604 retained_intron
  ENST00000491658 TFRC-007 196067607-196069700 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360110ENST00000392396ENST00000420415
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360110 8.643±0.00 7.239±0.00 1.979±0.00 9.669±0.88 9.391±4.47 6.595±0.78 10.474±7.43 6.721±1.74 3.780±0.72 25.118±3.75 17.411±0.00 21.785±5.23 16.748±0.25 5.777±0.07
ENST00000392396 3.023±0.00 2.443±0.00 N/A 2.223±0.00 N/A N/A N/A N/A N/A N/A 2.172±0.00 N/A 8.839±0.00 3.090±0.00
ENST00000420415 N/A N/A N/A 2.608±0.00 2.157±0.00 N/A 4.668±0.00 5.593±0.00 N/A N/A N/A N/A N/A 4.597±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0001 VISTA 3:195819501-196421470
CIL_0003O7 CIL_0003O7_0002 CGP 3:195863364-196082189

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003725 IDA double-stranded RNA binding
GO:0004998 IEA:NAS transferrin receptor activity
GO:0005515 IPI protein binding
GO:0005576 IDA extracellular region
GO:0005615 IDA extracellular space
GO:0005768 IDA endosome
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005905 IDA coated pit
GO:0006879 NAS cellular iron ion homeostasis
GO:0006898 IEA receptor-mediated endocytosis
GO:0009897 IEA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0016020 NAS membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016032 IEA viral process
GO:0030316 IEA osteoclast differentiation
GO:0031982 IDA vesicle
GO:0033572 IEA:TAS transferrin transport
GO:0042802 IPI identical protein binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0045780 IEA positive regulation of bone resorption
GO:0048471 IEA perinuclear region of cytoplasm
GO:0055037 IDA recycling endosome
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IDA blood microparticle
GO:0097286 IDA iron ion import

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012552 tfr1b transferrin receptor 1b protein_coding Danio_rerio
ENSDARG00000058784 tfr1a transferrin receptor 1a protein_coding Danio_rerio
ENSDARG00000077372 tfr1b transferrin receptor 1b protein_coding Danio_rerio
ENSMUSG00000022797 Tfrc transferrin receptor protein_coding Mus_musculus

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