C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transferrin receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392396 TFRC-002 ENSG00000072274 9606 - 3:196049476-196082090 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainMusclePlacentaTestisENST00000392396
Transcript ID Adipose Adrenal Brain Muscle Placenta Testis
ENST00000392396 3.023±0.00 2.443±0.00 2.223±0.00 2.172±0.00 8.839±0.00 3.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0001 VISTA 3:195819501-196421470
CIL_0003O7 CIL_0003O7_0002 CGP 3:195863364-196082189

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 IDA double-stranded RNA binding
GO:0004998 IEA:NAS transferrin receptor activity
GO:0005515 IPI protein binding
GO:0005576 IDA extracellular region
GO:0005615 IDA extracellular space
GO:0005768 IDA endosome
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005905 IDA coated pit
GO:0006879 NAS cellular iron ion homeostasis
GO:0006898 IEA receptor-mediated endocytosis
GO:0009986 IDA cell surface
GO:0016020 NAS membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016032 IEA viral process
GO:0031982 IDA vesicle
GO:0033572 IEA:TAS transferrin transport
GO:0042802 IPI identical protein binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0055037 IDA recycling endosome
GO:0055085 TAS transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IDA blood microparticle
GO:0097286 IDA iron ion import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023486 Tfrc-001 protein_coding Mus_musculus 0 2036
ENSMUST00000120680 Tfrc-002 protein_coding Mus_musculus 0 1171
ENSMUST00000128285 Tfrc-004 retained_intron Mus_musculus 0 817
ENSMUST00000137901 Tfrc-005 retained_intron Mus_musculus 7e-36 158
ENSDART00000021095 tfr1b-201 protein_coding Danio_rerio 2e-21 110
ENSDART00000137851 tfr1b-001 protein_coding Danio_rerio 2e-21 110

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