C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: murine retrovirus integration site 1 homolog
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000072952 MRVI1 9606 - 11:10573091-10693988 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000423302 MRVI1-001 10573095-10693752 protein_coding
  ENST00000424001 MRVI1-201 10573091-10652185 protein_coding
  ENST00000526414 MRVI1-003 10581906-10693522 nonsense_mediated_decay
  ENST00000527509 MRVI1-014 10576306-10693576 protein_coding
  ENST00000529068 MRVI1-009 10633968-10693586 nonsense_mediated_decay
  ENST00000529448 MRVI1-004 10576324-10693614 nonsense_mediated_decay
  ENST00000529471 MRVI1-012 10591576-10594023 retained_intron
  ENST00000529547 MRVI1-008 10632028-10693514 protein_coding
  ENST00000531107 MRVI1-002 10576224-10652286 protein_coding
  ENST00000531308 MRVI1-007 10652104-10693622 nonsense_mediated_decay
  ENST00000531786 MRVI1-006 10632032-10693804 processed_transcript
  ENST00000532037 MRVI1-011 10629685-10693957 processed_transcript
  ENST00000533631 MRVI1-010 10609761-10633984 nonsense_mediated_decay
  ENST00000534266 MRVI1-005 10576324-10652376 protein_coding
  ENST00000541483 MRVI1-013 10576005-10693622 protein_coding
  ENST00000547195 MRVI1-202 10573091-10693988 protein_coding
  ENST00000558540 MRVI1-015 10575760-10693552 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000423302ENST00000424001ENST00000526414ENST00000527509ENST00000531107ENST00000541483ENST00000547195ENST00000558540
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000423302 N/A N/A 2.897±1.64 N/A N/A N/A N/A 4.713±0.00 2.226±0.00 N/A 4.889±1.38 2.508±0.00 5.949±0.00
ENST00000424001 21.594±0.00 N/A 6.641±0.00 1.928±0.00 9.757±0.00 1.929±0.00 0.013±0.00 0.253±0.00 4.622±0.00 2.334±0.00 4.233±1.77 3.071±1.53 19.748±0.00
ENST00000526414 N/A 0.806±0.00 N/A N/A N/A N/A 0.428±0.00 N/A N/A N/A N/A N/A N/A
ENST00000527509 N/A N/A N/A 3.593±0.00 2.301±0.00 0.467±0.00 N/A N/A N/A N/A N/A 0.643±0.00 1.617±0.00
ENST00000531107 N/A N/A N/A N/A N/A 0.209±0.00 N/A N/A N/A N/A 1.355±0.00 N/A N/A
ENST00000541483 N/A N/A N/A N/A N/A N/A N/A N/A 0.552±0.00 N/A 1.455±0.00 N/A 1.787±0.00
ENST00000547195 N/A N/A 0.706±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558540 N/A N/A N/A N/A N/A N/A N/A 4.523±0.00 N/A N/A 0.789±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004J9 CIL_0004J9_0001 CGP 11:10511678-10611689
CIL_0004IK CIL_0004IK_0001 CGP 11:10556966-10693988
CIL_0004JB CIL_0004JB_0001 CGP 11:10573091-10779743

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005789 TAS endoplasmic reticulum membrane
GO:0007596 TAS blood coagulation
GO:0016021 IEA integral component of membrane
GO:0016529 IEA sarcoplasmic reticulum
GO:0019934 IEA cGMP-mediated signaling
GO:0031095 TAS platelet dense tubular network membrane
GO:0045986 IEA negative regulation of smooth muscle contraction
GO:0060087 IEA relaxation of vascular smooth muscle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074602 mrvi1 murine retrovirus integration site 1 homolog protein_coding Danio_rerio
ENSMUSG00000005611 Mrvi1 MRV integration site 1 protein_coding Mus_musculus

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