C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004JB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000072952-ENSG00000198730 CGP 9606 11:10573091-10779743
GeneTranscriptPositionBiotype
ENSG00000072952 (MRVI1)
murine retrovirus integration site 1 homolog 		ENST00000423302 (MRVI1-001) 10573095-10693752 protein_coding
ENST00000424001 (MRVI1-201) 10573091-10652185 protein_coding
ENST00000526414 (MRVI1-003) 10581906-10693522 nonsense_mediated_decay
ENST00000527509 (MRVI1-014) 10576306-10693576 protein_coding
ENST00000529068 (MRVI1-009) 10633968-10693586 nonsense_mediated_decay
ENST00000529448 (MRVI1-004) 10576324-10693614 nonsense_mediated_decay
ENST00000529471 (MRVI1-012) 10591576-10594023 retained_intron
ENST00000529547 (MRVI1-008) 10632028-10693514 protein_coding
ENST00000531107 (MRVI1-002) 10576224-10652286 protein_coding
ENST00000531308 (MRVI1-007) 10652104-10693622 nonsense_mediated_decay
ENST00000531786 (MRVI1-006) 10632032-10693804 processed_transcript
ENST00000532037 (MRVI1-011) 10629685-10693957 processed_transcript
ENST00000533631 (MRVI1-010) 10609761-10633984 nonsense_mediated_decay
ENST00000534266 (MRVI1-005) 10576324-10652376 protein_coding
ENST00000541483 (MRVI1-013) 10576005-10693622 protein_coding
ENST00000547195 (MRVI1-202) 10573091-10693988 protein_coding
ENST00000558540 (MRVI1-015) 10575760-10693552 protein_coding
ENSG00000133800 (LYVE1)
lymphatic vessel endothelial hyaluronan receptor 1 		ENST00000256178 (LYVE1-001) 10556966-10568691 protein_coding
ENST00000438354 (LYVE1-002) 10558363-10568718 nonsense_mediated_decay
ENST00000529598 (LYVE1-003) 10558877-10568577 protein_coding
ENST00000531706 (LYVE1-004) 10559816-10611689 processed_transcript
ENSG00000198730 (CTR9)
CTR9, Paf1/RNA polymerase II complex component 		ENST00000361367 (CTR9-001) 10750987-10779743 protein_coding
ENST00000524523 (CTR9-002) 10751452-10763734 protein_coding
ENST00000526874 (CTR9-003) 10766334-10768476 retained_intron
ENST00000529355 (CTR9-004) 10767051-10768459 retained_intron
ENST00000529898 (CTR9-005) 10772507-10774309 retained_intron

Homo sapiens Ensembl (GRCh38)

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Transcripts
Structures from Ensembl
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CIL_0004JB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005611-ENSMUSG00000005609 CGP 10090 7:110868266-111056377
GeneTranscriptPositionBiotype
ENSMUSG00000005609 (Ctr9)
Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) 		ENSMUST00000005749 (Ctr9-001) 111028951-111056377 protein_coding
ENSMUST00000123681 (Ctr9-008) 111050993-111052370 processed_transcript
ENSMUST00000140220 (Ctr9-006) 111034036-111035392 retained_intron
ENSMUST00000143818 (Ctr9-005) 111030215-111034056 processed_transcript
ENSMUST00000146558 (Ctr9-007) 111046310-111046822 retained_intron
ENSMUST00000146709 (Ctr9-004) 111029013-111030809 retained_intron
ENSMUST00000152019 (Ctr9-002) 111028995-111047647 retained_intron
ENSMUST00000157025 (Ctr9-003) 111046310-111047979 retained_intron
ENSMUSG00000005611 (Mrvi1)
MRV integration site 1 		ENSMUST00000005751 (Mrvi1-001) 110868270-110982461 protein_coding
ENSMUST00000125758 (Mrvi1-002) 110868272-110946187 protein_coding
ENSMUST00000127935 (Mrvi1-004) 110868266-110926403 protein_coding
ENSMUST00000135590 (Mrvi1-006) 110924350-110926672 retained_intron
ENSMUST00000142368 (Mrvi1-003) 110923860-110982058 protein_coding
ENSMUST00000149923 (Mrvi1-007) 110919792-110923703 processed_transcript
ENSMUST00000154466 (Mrvi1-005) 110926385-110982204 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JB_0001ENSG00000072952ENST00000423302ENST00000424001ENST00000526414ENST00000527509ENST00000529068ENST00000529448ENST00000529471ENST00000529547ENST00000531107ENST00000531308ENST00000531786ENST00000532037ENST00000533631ENST00000534266ENST00000541483ENST00000547195ENST00000558540ENSG00000133800ENST00000256178ENST00000438354ENST00000529598ENST00000531706ENSG00000198730ENST00000361367ENST00000524523ENST00000526874ENST00000529355ENST00000529898CIL_0004JB_0002ENSMUSG00000005609ENSMUST00000005749ENSMUST00000123681ENSMUST00000140220ENSMUST00000143818ENSMUST00000146558ENSMUST00000146709ENSMUST00000152019ENSMUST00000157025ENSMUSG00000005611ENSMUST00000005751ENSMUST00000125758ENSMUST00000127935ENSMUST00000135590ENSMUST00000142368ENSMUST00000149923ENSMUST00000154466
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004JB_0001ENSG00000072952ENST00000423302ENST00000424001ENST00000526414ENST00000527509ENST00000531107ENST00000541483ENST00000547195ENST00000558540ENSG00000133800ENST00000256178ENST00000438354ENST00000529598ENST00000531706ENSG00000198730ENST00000361367ENST00000526874ENST00000529898CIL_0004JB_0002ENSMUSG00000005609ENSMUST00000005749ENSMUST00000123681ENSMUST00000143818ENSMUSG00000005611ENSMUST00000005751ENSMUST00000125758ENSMUST00000127935ENSMUST00000142368
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072952 ENST00000423302 N/A N/A N/A 2.897±1.64 N/A N/A N/A N/A 4.713±0.00 2.226±0.00 N/A 4.889±1.38 2.508±0.00 5.949±0.00
ENST00000424001 N/A 21.594±0.00 N/A 6.641±0.00 1.928±0.00 9.757±0.00 1.929±0.00 0.013±0.00 0.253±0.00 4.622±0.00 2.334±0.00 4.233±1.77 3.071±1.53 19.748±0.00
ENST00000526414 N/A N/A 0.806±0.00 N/A N/A N/A N/A 0.428±0.00 N/A N/A N/A N/A N/A N/A
ENST00000527509 N/A N/A N/A N/A 3.593±0.00 2.301±0.00 0.467±0.00 N/A N/A N/A N/A N/A 0.643±0.00 1.617±0.00
ENST00000529068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529471 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531107 N/A N/A N/A N/A N/A N/A 0.209±0.00 N/A N/A N/A N/A 1.355±0.00 N/A N/A
ENST00000531308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531786 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541483 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.552±0.00 N/A 1.455±0.00 N/A 1.787±0.00
ENST00000547195 N/A N/A N/A 0.706±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558540 N/A N/A N/A N/A N/A N/A N/A N/A 4.523±0.00 N/A N/A 0.789±0.00 N/A N/A
ENSG00000133800 ENST00000256178 20.235±0.00 8.181±0.00 0.422±0.00 0.552±0.08 4.687±1.15 4.074±0.00 2.874±1.82 2.029±0.32 4.231±0.55 6.365±2.89 1.101±0.82 1.661±1.43 17.095±4.26 1.035±0.57
ENST00000438354 33.365±0.00 14.134±0.00 0.808±0.00 0.874±0.09 4.697±3.02 2.499±0.00 1.018±0.00 3.285±0.03 5.578±0.31 8.274±4.19 2.247±0.00 3.033±3.32 63.443±21.62 2.339±0.00
ENST00000529598 N/A N/A 0.584±0.00 0.681±0.00 8.317±0.00 11.990±9.19 2.305±0.00 6.005±0.00 12.913±2.65 19.384±0.00 1.658±0.00 2.006±0.00 N/A N/A
ENST00000531706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.807±0.00 N/A N/A N/A
ENSG00000198730 ENST00000361367 6.702±0.00 8.680±0.00 0.886±0.00 3.385±2.09 7.520±0.00 3.518±3.16 3.130±2.51 8.392±5.55 1.952±1.00 2.606±0.87 2.338±1.71 5.315±2.58 7.158±2.22 19.155±4.07
ENST00000524523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526874 N/A N/A N/A 3.455±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.206±0.00 9.914±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005609 ENSMUST00000005749 14.781±7.85 3.410±0.36 13.169±1.28 14.671±3.85 9.161±1.06 5.615±1.21 3.256±0.12 7.106±0.23 6.774±3.63 5.204±0.43 3.933±0.17 13.068±3.35 36.539±13.62 11.444±0.23
ENSMUST00000123681 N/A N/A N/A 22.777±0.00 N/A N/A N/A N/A N/A N/A N/A 36.261±0.00 59.299±0.00 72.717±0.00
ENSMUST00000140220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143818 N/A N/A N/A 22.808±0.00 N/A N/A N/A N/A N/A N/A N/A 41.063±0.00 102.528±25.06 N/A
ENSMUST00000146558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000157025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000005611 ENSMUST00000005751 10.783±9.09 1.215±0.54 8.609±1.79 0.092±0.00 0.842±0.16 6.269±0.95 1.283±0.34 0.741±0.19 0.313±0.16 1.156±0.36 N/A 9.135±2.79 0.700±0.18 0.353±0.06
ENSMUST00000125758 N/A N/A N/A N/A N/A N/A N/A N/A 0.122±0.00 N/A 0.370±0.14 1.214±0.00 0.157±0.00 N/A
ENSMUST00000127935 37.021±0.77 1.320±0.33 39.963±8.83 0.506±0.47 1.901±0.44 7.536±0.52 2.297±0.25 1.073±0.30 1.406±1.08 1.994±0.77 0.600±0.27 18.717±7.60 1.433±1.11 0.230±0.03
ENSMUST00000135590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142368 N/A 1.958±0.00 N/A N/A N/A 8.738±0.00 N/A N/A 0.167±0.00 N/A N/A N/A N/A N/A
ENSMUST00000149923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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