C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: squamous cell carcinoma antigen recognized by T cells 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000075856 SART3 9606 - 12:108522580-108561400 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000228284 SART3-001 108522580-108561389 protein_coding
  ENST00000431469 SART3-005 108523412-108561159 protein_coding
  ENST00000546611 SART3-017 108560217-108561400 protein_coding
  ENST00000546728 SART3-003 108522708-108561161 nonsense_mediated_decay
  ENST00000546808 SART3-012 108531204-108535573 retained_intron
  ENST00000546815 SART3-006 108526210-108561159 protein_coding
  ENST00000547397 SART3-011 108523869-108526185 protein_coding
  ENST00000547528 SART3-004 108530210-108561160 nonsense_mediated_decay
  ENST00000548077 SART3-010 108531224-108537695 retained_intron
  ENST00000548119 SART3-009 108537106-108538132 retained_intron
  ENST00000548582 SART3-013 108530210-108532617 retained_intron
  ENST00000550322 SART3-008 108543069-108549328 protein_coding
  ENST00000550619 SART3-015 108545139-108554198 protein_coding
  ENST00000551416 SART3-014 108543112-108544944 retained_intron
  ENST00000552221 SART3-007 108545289-108561168 processed_transcript
  ENST00000619503 SART3-016 108530223-108531968 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228284ENST00000546728ENST00000546815ENST00000547397ENST00000547528
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228284 1.217±0.00 1.721±0.00 N/A 3.141±0.00 1.953±0.00 N/A 0.746±0.20 N/A 1.266±0.00 2.462±0.00 N/A 6.079±0.00 3.170±1.17 N/A
ENST00000546728 7.383±0.00 7.690±0.00 N/A 6.385±3.56 5.563±0.00 5.016±1.30 4.271±0.00 7.573±0.00 2.702±0.16 5.074±2.65 7.139±0.00 12.305±11.29 5.883±4.56 16.484±5.12
ENST00000546815 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.200±0.00 N/A N/A N/A N/A
ENST00000547397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.866±0.00 N/A N/A
ENST00000547528 N/A N/A 3.685±0.00 4.806±0.00 N/A 2.382±0.00 1.391±0.00 4.275±0.00 5.687±0.00 N/A N/A 6.078±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MA CIL_0001MA_0001 CGP 12:108515185-108561400
CIL_0001M7 CIL_0001M7_0001 CGP 12:108522580-108569384

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000244 IDA spliceosomal tri-snRNP complex assembly
GO:0000902 IEA cell morphogenesis
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006396 IEA RNA processing
GO:0010468 IDA regulation of gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0048872 IEA homeostasis of number of cells
GO:0071425 IEA hematopoietic stem cell proliferation
GO:1990381 IPI ubiquitin-specific protease binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008032 sart3 squamous cell carcinoma antigen recognised by T cells 3 protein_coding Danio_rerio
ENSMUSG00000018974 Sart3 squamous cell carcinoma antigen recognized by T cells 3 protein_coding Mus_musculus

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