C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: squamous cell carcinoma antigen recognized by T cells 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546728 SART3-003 ENSG00000075856 9606 - 12:108522708-108561161 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000546728
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000546728 7.383±0.00 7.690±0.00 6.385±3.56 5.563±0.00 5.016±1.30 4.271±0.00 7.573±0.00 2.702±0.16 5.074±2.65 7.139±0.00 12.305±11.29 5.883±4.56 16.484±5.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MA CIL_0001MA_0001 CGP 12:108515185-108561400
CIL_0001M7 CIL_0001M7_0001 CGP 12:108522580-108569384

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000244 IDA spliceosomal tri-snRNP complex assembly
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006396 IEA RNA processing
GO:0010468 IDA regulation of gene expression
GO:0044822 IDA poly(A) RNA binding
GO:1990381 IPI ubiquitin-specific protease binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019118 Sart3-201 protein_coding Mus_musculus 0 2630

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