C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rho GTPase activating protein 15
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000075884 ARHGAP15 9606 + 2:143091362-143768352 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295095 ARHGAP15-001 143129314-143768352 protein_coding
  ENST00000409869 ARHGAP15-002 143091362-143238352 protein_coding
  ENST00000419455 ARHGAP15-006 143556408-143624267 nonsense_mediated_decay
  ENST00000460776 ARHGAP15-003 143193384-143435699 processed_transcript
  ENST00000469117 ARHGAP15-005 143247290-143437042 processed_transcript
  ENST00000473426 ARHGAP15-007 143601517-143608759 processed_transcript
  ENST00000474474 ARHGAP15-004 143228098-143435699 processed_transcript
  ENST00000548242 ARHGAP15-010 143435266-143533317 processed_transcript
  ENST00000548800 ARHGAP15-009 143435264-143437103 retained_intron
  ENST00000548929 ARHGAP15-011 143435314-143487479 retained_intron
  ENST00000549060 ARHGAP15-014 143706411-143768348 processed_transcript
  ENST00000549436 ARHGAP15-013 143519278-143703960 retained_intron
  ENST00000552289 ARHGAP15-012 143487363-143519485 retained_intron
  ENST00000552641 ARHGAP15-008 143129413-143437357 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295095ENST00000409869ENST00000460776ENST00000473426ENST00000548242ENST00000548929ENST00000549060ENST00000549436ENST00000552289
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295095 1.317±0.00 4.393±0.00 0.429±0.00 0.366±0.16 3.708±0.00 2.859±0.00 0.862±0.00 0.306±0.00 0.326±0.00 8.266±0.00 N/A 0.939±0.13 0.729±0.32 N/A
ENST00000409869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A 0.403±0.00
ENST00000460776 N/A N/A 0.692±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473426 0.049±0.00 0.965±0.00 N/A 0.021±0.00 0.260±0.24 0.150±0.05 0.086±0.04 0.032±0.00 0.046±0.00 0.656±0.57 N/A 0.190±0.19 0.021±0.00 0.015±0.00
ENST00000548242 N/A N/A N/A N/A N/A N/A N/A N/A 2.756±0.00 N/A 1.595±0.00 1.027±0.00 N/A N/A
ENST00000548929 N/A N/A 1.079±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549060 N/A N/A N/A 0.310±0.00 N/A N/A N/A N/A N/A N/A N/A 0.723±0.00 N/A 4.649±0.00
ENST00000549436 N/A N/A N/A 0.169±0.00 N/A N/A N/A N/A N/A N/A 0.391±0.00 N/A N/A N/A
ENST00000552289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.663±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RY CIL_0008RY_0001 VISTA 2:142856840-143457904
CIL_0006M7 CIL_0006M7_0001 CGP 2:142877498-143768352
CIL_0008IO CIL_0008IO_0001 VISTA 2:143046313-143648075
CIL_0008RZ CIL_0008RZ_0001 VISTA 2:143054292-143655249
CIL_0008RC CIL_0008RC_0001 VISTA 2:143057439-143659166
CIL_0006M8 CIL_0006M8_0001 CGP 2:143091362-144332568

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0008360 IDA regulation of cell shape
GO:0016020 IEA membrane
GO:0030675 IDA Rac GTPase activator activity
GO:0032855 IDA positive regulation of Rac GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062349 arhgap15 Rho GTPase activating protein 15 protein_coding Danio_rerio
ENSMUSG00000049744 Arhgap15 Rho GTPase activating protein 15 protein_coding Mus_musculus

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