C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295095 ARHGAP15-001 ENSG00000075884 9606 + 2:143129314-143768352 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000295095
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000295095 1.317±0.00 4.393±0.00 0.429±0.00 0.366±0.16 3.708±0.00 2.859±0.00 0.862±0.00 0.306±0.00 0.326±0.00 8.266±0.00 0.939±0.13 0.729±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RY CIL_0008RY_0001 VISTA 2:142856840-143457904
CIL_0006M7 CIL_0006M7_0001 CGP 2:142877498-143768352
CIL_0008IO CIL_0008IO_0001 VISTA 2:143046313-143648075
CIL_0008RZ CIL_0008RZ_0001 VISTA 2:143054292-143655249
CIL_0008RC CIL_0008RC_0001 VISTA 2:143057439-143659166
CIL_0006M8 CIL_0006M8_0001 CGP 2:143091362-144332568

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0008360 IDA regulation of cell shape
GO:0016020 IEA membrane
GO:0030675 IDA Rac GTPase activator activity
GO:0032855 IDA positive regulation of Rac GTPase activity
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000055776 Arhgap15-001 protein_coding Mus_musculus 0 1964
ENSMUST00000112822 Arhgap15-003 nonsense_mediated_decay Mus_musculus 0 1604
ENSMUST00000112824 Arhgap15-002 protein_coding Mus_musculus 0 1513
ENSMUST00000140528 Arhgap15-004 processed_transcript Mus_musculus 0 580
ENSMUST00000128630 Arhgap15-005 processed_transcript Mus_musculus 0 326

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