C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: structural maintenance of chromosomes 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000077935 SMC1B 9606 - 22:45344063-45413619 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357450 SMC1B-003 45344063-45413567 protein_coding
  ENST00000404354 SMC1B-002 45344458-45413619 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLungOvaryPlacentaTestisENST00000357450ENST00000404354
Transcript ID Adrenal Brain Breast Colon Heart Lung Ovary Placenta Testis
ENST00000357450 0.031±0.00 N/A 0.062±0.00 0.014±0.00 N/A 0.004±0.00 0.023±0.01 0.058±0.00 16.142±3.95
ENST00000404354 N/A 0.028±0.00 N/A N/A 0.008±0.00 N/A N/A 0.148±0.00 13.147±11.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054D CIL_00054D_0001 CGP 22:45308968-45413619
CIL_00054C CIL_00054C_0001 CGP 22:45344063-45432496

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0000794 IEA condensed nuclear chromosome
GO:0000795 IEA synaptonemal complex
GO:0000800 IEA lateral element
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005694 IEA chromosome
GO:0007062 IEA sister chromatid cohesion
GO:0007126 IEA meiotic nuclear division
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030893 IDA meiotic cohesin complex
GO:0034991 IEA nuclear meiotic cohesin complex
GO:0051276 IEA chromosome organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014402 smc1b structural maintenance of chromosomes 1B protein_coding Danio_rerio
ENSMUSG00000022432 Smc1b structural maintenance of chromosomes 1B protein_coding Mus_musculus

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