C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00054D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100376-ENSG00000077935 CGP 9606 22:45308968-45413619
GeneTranscriptPositionBiotype
ENSG00000077935 (SMC1B)
structural maintenance of chromosomes 1B 		ENST00000357450 (SMC1B-003) 45344063-45413567 protein_coding
ENST00000404354 (SMC1B-002) 45344458-45413619 protein_coding
ENSG00000100376 (FAM118A)
family with sequence similarity 118, member A 		ENST00000216214 (FAM118A-001) 45308982-45341955 protein_coding
ENST00000405673 (FAM118A-003) 45310124-45329412 protein_coding
ENST00000424557 (FAM118A-008) 45318791-45322383 protein_coding
ENST00000427777 (FAM118A-006) 45318420-45327960 protein_coding
ENST00000441876 (FAM118A-002) 45309847-45340761 protein_coding
ENST00000452238 (FAM118A-007) 45318480-45322426 protein_coding
ENST00000459849 (FAM118A-010) 45329635-45332691 processed_transcript
ENST00000462361 (FAM118A-013) 45335216-45340846 retained_intron
ENST00000476478 (FAM118A-009) 45329148-45330719 processed_transcript
ENST00000476754 (FAM118A-011) 45329644-45332655 processed_transcript
ENST00000477714 (FAM118A-005) 45310137-45328241 retained_intron
ENST00000479180 (FAM118A-014) 45336395-45340882 processed_transcript
ENST00000481447 (FAM118A-015) 45309041-45310100 processed_transcript
ENST00000483102 (FAM118A-016) 45335025-45340761 processed_transcript
ENST00000487732 (FAM118A-012) 45330457-45336410 retained_intron
ENST00000491671 (FAM118A-004) 45308968-45310173 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_00054D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022434-ENSMUSG00000022432 CGP 10090 15:85037062-85131957
GeneTranscriptPositionBiotype
ENSMUSG00000022432 (Smc1b)
structural maintenance of chromosomes 1B 		ENSMUST00000023068 (Smc1b-201) 85064691-85131957 protein_coding
ENSMUSG00000022434 (Fam118a)
family with sequence similarity 118, member A 		ENSMUST00000023069 (Fam118a-201) 85037062-85062828 protein_coding
ENSMUSG00000078289 (Gm10923)
predicted gene 10923 		ENSMUST00000105085 (Gm10923-001) 85116870-85117287 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00054D_0001ENSG00000077935ENST00000357450ENST00000404354ENSG00000100376ENST00000216214ENST00000405673ENST00000424557ENST00000427777ENST00000441876ENST00000452238ENST00000459849ENST00000462361ENST00000476478ENST00000476754ENST00000477714ENST00000479180ENST00000481447ENST00000483102ENST00000487732ENST00000491671CIL_00054D_0002ENSMUSG00000022432ENSMUST00000023068ENSMUSG00000022434ENSMUST00000023069ENSMUSG00000078289ENSMUST00000105085
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00054D_0001ENSG00000077935ENST00000357450ENST00000404354ENSG00000100376ENST00000216214ENST00000405673ENST00000441876ENST00000479180ENST00000483102ENST00000487732CIL_00054D_0002ENSMUSG00000022432ENSMUST00000023068ENSMUSG00000022434ENSMUST00000023069ENSMUSG00000078289ENSMUST00000105085
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000077935 ENST00000357450 N/A 0.031±0.00 N/A N/A 0.062±0.00 0.014±0.00 N/A N/A N/A 0.004±0.00 N/A 0.023±0.01 0.058±0.00 16.142±3.95
ENST00000404354 N/A N/A N/A 0.028±0.00 N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A 0.148±0.00 13.147±11.03
ENSG00000100376 ENST00000216214 N/A N/A N/A 0.347±0.00 N/A 0.527±0.00 N/A N/A N/A N/A N/A 3.810±2.65 N/A N/A
ENST00000405673 N/A N/A N/A 0.811±0.00 N/A N/A 0.618±0.00 N/A 0.784±0.00 N/A N/A N/A N/A N/A
ENST00000424557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441876 1.950±0.00 N/A 0.340±0.00 0.832±0.00 2.989±0.00 1.100±0.00 1.204±0.00 N/A N/A 2.431±0.00 3.025±0.00 5.615±2.15 2.872±1.00 13.676±4.59
ENST00000452238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479180 N/A N/A 0.810±0.00 3.096±0.00 8.069±0.00 N/A 1.250±0.00 N/A N/A N/A 7.699±0.00 N/A N/A N/A
ENST00000481447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.397±0.00 4.214±0.00 18.286±0.00
ENST00000487732 N/A N/A N/A 3.546±0.00 N/A 5.110±0.00 0.843±0.00 N/A 2.777±0.00 3.019±0.00 N/A N/A N/A N/A
ENST00000491671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022432 ENSMUST00000023068 N/A 0.113±0.03 N/A 0.018±0.01 0.016±0.00 N/A 0.014±0.01 0.014±0.00 0.021±0.01 0.055±0.00 0.008±0.00 0.159±0.06 0.097±0.07 49.345±65.08
ENSMUSG00000022434 ENSMUST00000023069 3.926±1.65 1.931±1.12 16.315±0.57 4.470±0.45 3.615±1.30 2.503±0.95 1.370±0.23 1.991±0.25 1.421±0.72 2.962±0.97 0.966±0.34 4.775±2.38 3.904±1.53 9.436±3.83
ENSMUSG00000078289 ENSMUST00000105085 0.138±0.00 N/A 0.148±0.02 0.191±0.10 N/A N/A 0.120±0.00 0.148±0.00 0.041±0.01 N/A 0.135±0.00 0.284±0.17 0.155±0.18 1.206±0.62

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