C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357450 SMC1B-003 ENSG00000077935 9606 - 22:45344063-45413567 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryPlacentaTestisENST00000357450
Transcript ID Adrenal Breast Colon Lung Ovary Placenta Testis
ENST00000357450 0.031±0.00 0.062±0.00 0.014±0.00 0.004±0.00 0.023±0.01 0.058±0.00 16.142±3.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054D CIL_00054D_0001 CGP 22:45308968-45413619
CIL_00054C CIL_00054C_0001 CGP 22:45344063-45432496

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0000794 IEA condensed nuclear chromosome
GO:0000795 IEA synaptonemal complex
GO:0000800 IEA lateral element
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005694 IEA chromosome
GO:0007062 IEA sister chromatid cohesion
GO:0007126 IEA meiotic nuclear division
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030893 IDA meiotic cohesin complex
GO:0034991 IEA nuclear meiotic cohesin complex
GO:0051276 IEA chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023068 Smc1b-201 protein_coding Mus_musculus 0 3949

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