C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptojanin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000078269 SYNJ2 9606 + 6:157981887-158099176 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355585 SYNJ2-002 157981887-158099176 protein_coding
  ENST00000367112 SYNJ2-003 158077680-158097854 protein_coding
  ENST00000367113 SYNJ2-004 157982038-158030497 protein_coding
  ENST00000367122 SYNJ2-201 158070128-158096463 protein_coding
  ENST00000449320 SYNJ2-005 158017465-158028971 protein_coding
  ENST00000485863 SYNJ2-001 158033490-158063872 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355585ENST00000367122
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355585 0.416±0.00 4.233±0.00 0.552±0.00 11.154±6.67 1.598±0.00 2.168±0.20 1.327±0.91 0.852±0.12 0.592±0.00 1.621±0.00 1.189±0.77 11.247±8.42 1.478±0.30 1.937±0.32
ENST00000367122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.821±0.00 4.168±1.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055D CIL_00055D_0001 CGP 6:157700387-158099176
CIL_00055M CIL_00055M_0001 CGP 6:157981887-158168270

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0004439 IEA phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0006644 TAS phospholipid metabolic process
GO:0006661 TAS phosphatidylinositol biosynthetic process
GO:0008152 IEA metabolic process
GO:0016020 IEA membrane
GO:0042578 IEA phosphoric ester hydrolase activity
GO:0044281 TAS small molecule metabolic process
GO:0046856 IEA phosphatidylinositol dephosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000023805 Synj2 synaptojanin 2 protein_coding Mus_musculus

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