C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptojanin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023805 Synj2 10090 + 17:5941280-6044290 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000061091 Synj2-004 5975641-6044290 protein_coding
  ENSMUST00000080283 Synj2-001 5941403-6038555 protein_coding
  ENSMUST00000115784 Synj2-010 6007580-6032929 protein_coding
  ENSMUST00000115785 Synj2-011 6007597-6038406 protein_coding
  ENSMUST00000115786 Synj2-009 5996846-6020555 protein_coding
  ENSMUST00000115787 Synj2-008 5996016-6038328 protein_coding
  ENSMUST00000115788 Synj2-015 5990063-6044290 protein_coding
  ENSMUST00000115789 Synj2-007 5987986-6039341 protein_coding
  ENSMUST00000115790 Synj2-006 5975740-6038555 protein_coding
  ENSMUST00000115791 Synj2-201 5941280-6038555 protein_coding
  ENSMUST00000126881 Synj2-014 6025076-6037462 protein_coding
  ENSMUST00000130661 Synj2-012 6007612-6010490 processed_transcript
  ENSMUST00000134767 Synj2-002 5941378-6039390 nonsense_mediated_decay
  ENSMUST00000142409 Synj2-005 5975586-6026290 protein_coding
  ENSMUST00000146009 Synj2-003 5941280-6032793 protein_coding
  ENSMUST00000154114 Synj2-013 6013549-6038373 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080283ENSMUST00000115784ENSMUST00000115785ENSMUST00000115788ENSMUST00000115789ENSMUST00000115790ENSMUST00000115791ENSMUST00000134767
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.992±0.00 N/A N/A
ENSMUST00000115784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.809±0.00
ENSMUST00000115785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.190±0.00 N/A N/A 4.373±0.42
ENSMUST00000115788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.906±0.79
ENSMUST00000115789 1.738±0.00 0.968±0.00 N/A N/A N/A 2.080±0.15 N/A N/A 0.655±0.22 N/A N/A 1.839±0.66 1.254±0.21 2.321±0.11
ENSMUST00000115790 1.253±0.26 0.566±0.00 4.227±0.00 N/A 1.374±0.58 2.294±0.46 3.671±0.95 0.442±0.00 0.347±0.00 1.642±0.47 1.991±0.42 2.734±1.05 3.114±0.00 N/A
ENSMUST00000115791 2.046±1.15 1.744±0.37 3.527±0.97 N/A 1.855±0.32 4.920±0.70 1.760±0.09 0.471±0.02 0.586±0.19 1.611±0.37 N/A 2.751±1.13 1.455±0.07 N/A
ENSMUST00000134767 1.092±0.00 N/A 2.664±0.00 4.827±0.00 0.985±0.18 1.450±0.00 2.324±0.07 0.343±0.03 0.191±0.00 1.700±0.08 1.090±0.00 1.439±0.57 0.665±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055D CIL_00055D_0002 CGP 17:5841328-6044290
CIL_00055M CIL_00055M_0002 CGP 17:5941280-6079741

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0004439 IDA phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0016020 IEA membrane
GO:0016311 IDA dephosphorylation
GO:0046856 IEA phosphatidylinositol dephosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000078269 SYNJ2 synaptojanin 2 protein_coding Homo_sapiens

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