C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355585 SYNJ2-002 ENSG00000078269 9606 + 6:157981887-158099176 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355585 0.416±0.00 4.233±0.00 0.552±0.00 11.154±6.67 1.598±0.00 2.168±0.20 1.327±0.91 0.852±0.12 0.592±0.00 1.621±0.00 1.189±0.77 11.247±8.42 1.478±0.30 1.937±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055D CIL_00055D_0001 CGP 6:157700387-158099176
CIL_00055M CIL_00055M_0001 CGP 6:157981887-158168270

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0004439 IEA phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0006644 TAS phospholipid metabolic process
GO:0006661 TAS phosphatidylinositol biosynthetic process
GO:0016020 IEA membrane
GO:0042578 IEA phosphoric ester hydrolase activity
GO:0044281 TAS small molecule metabolic process
GO:0046856 IEA phosphatidylinositol dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000115791 Synj2-201 protein_coding Mus_musculus 0 4034
ENSMUST00000115790 Synj2-006 protein_coding Mus_musculus 0 3916
ENSMUST00000061091 Synj2-004 protein_coding Mus_musculus 0 3740
ENSMUST00000146009 Synj2-003 protein_coding Mus_musculus 0 3690
ENSMUST00000134767 Synj2-002 nonsense_mediated_decay Mus_musculus 0 3507
ENSMUST00000080283 Synj2-001 protein_coding Mus_musculus 0 3472
ENSMUST00000115788 Synj2-015 protein_coding Mus_musculus 0 3009
ENSMUST00000115789 Synj2-007 protein_coding Mus_musculus 0 3007
ENSMUST00000115787 Synj2-008 protein_coding Mus_musculus 0 2769
ENSMUST00000142409 Synj2-005 protein_coding Mus_musculus 0 2553
ENSMUST00000115785 Synj2-011 protein_coding Mus_musculus 0 2449
ENSMUST00000115784 Synj2-010 protein_coding Mus_musculus 0 2449
ENSMUST00000154114 Synj2-013 protein_coding Mus_musculus 0 1731
ENSMUST00000115786 Synj2-009 protein_coding Mus_musculus 0 1646
ENSMUST00000126881 Synj2-014 protein_coding Mus_musculus 0 623
ENSMUST00000130661 Synj2-012 processed_transcript Mus_musculus 0 379

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