C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00055D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130340-ENSG00000078269 CGP 9606 6:157700387-158099176
GeneTranscriptPositionBiotype
ENSG00000078269 (SYNJ2)
synaptojanin 2 		ENST00000355585 (SYNJ2-002) 157981887-158099176 protein_coding
ENST00000367112 (SYNJ2-003) 158077680-158097854 protein_coding
ENST00000367113 (SYNJ2-004) 157982038-158030497 protein_coding
ENST00000367122 (SYNJ2-201) 158070128-158096463 protein_coding
ENST00000449320 (SYNJ2-005) 158017465-158028971 protein_coding
ENST00000485863 (SYNJ2-001) 158033490-158063872 nonsense_mediated_decay
ENSG00000130340 (SNX9)
sorting nexin 9 		ENST00000392185 (SNX9-001) 157823264-157945077 protein_coding
ENST00000611124 (SNX9-201) 157867249-157945077 protein_coding
ENST00000614703 (SNX9-002) 157700387-157875149 protein_coding
ENST00000614800 (SNX9-003) 157716046-157875087 protein_coding
ENSG00000220867 (HSPE1P26)
heat shock 10kDa protein 1 pseudogene 26 		ENST00000405341 (HSPE1P26-001) 157924402-157924676 processed_pseudogene
ENSG00000233496 (SYNJ2-IT1)
SYNJ2 intronic transcript 1 (non-protein coding) 		ENST00000442328 (SYNJ2-IT1-001) 158001107-158002383 sense_intronic
ENSG00000234361 (RP11-52J3.3)
 ENST00000411838 (RP11-52J3.3-001) 157829143-157830573 antisense
ENSG00000236324 (RP3-403L10.3)
 ENST00000446768 (RP3-403L10.3-001) 157885114-157892786 antisense
ENSG00000252658 (RNU6-786P)
RNA, U6 small nuclear 786, pseudogene 		ENST00000516849 (RNU6-786P-201) 157934168-157934257 snRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00055D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000002365-ENSMUSG00000023805 CGP 10090 17:5841328-6044290
GeneTranscriptPositionBiotype
ENSMUSG00000002365 (Snx9)
sorting nexin 9 		ENSMUST00000002436 (Snx9-201) 5841328-5931033 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00055D_0001ENSG00000078269ENST00000355585ENST00000367112ENST00000367113ENST00000367122ENST00000449320ENST00000485863ENSG00000130340ENST00000392185ENST00000611124ENST00000614703ENST00000614800ENSG00000220867ENST00000405341ENSG00000233496ENST00000442328ENSG00000234361ENST00000411838ENSG00000236324ENST00000446768ENSG00000252658ENST00000516849CIL_00055D_0002ENSMUSG00000002365ENSMUST00000002436
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00055D_0001ENSG00000078269ENST00000355585ENST00000367122ENSG00000130340ENST00000392185ENST00000611124ENSG00000220867ENST00000405341ENSG00000233496ENST00000442328ENSG00000234361ENST00000411838ENSG00000236324ENST00000446768ENSG00000252658ENST00000516849CIL_00055D_0002ENSMUSG00000002365ENSMUST00000002436
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078269 ENST00000355585 0.416±0.00 4.233±0.00 0.552±0.00 11.154±6.67 1.598±0.00 2.168±0.20 1.327±0.91 0.852±0.12 0.592±0.00 1.621±0.00 1.189±0.77 11.247±8.42 1.478±0.30 1.937±0.32
ENST00000367112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000367113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000367122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.821±0.00 4.168±1.88
ENST00000449320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000130340 ENST00000392185 N/A N/A 1.831±0.00 1.089±0.00 1.632±0.00 N/A 1.382±0.28 N/A 2.527±0.00 2.390±0.63 N/A 15.568±20.27 11.885±12.52 8.981±0.00
ENST00000611124 N/A N/A 0.614±0.00 1.939±0.00 2.106±0.00 N/A N/A 2.806±0.00 6.282±0.00 N/A 1.613±0.00 9.880±0.00 N/A N/A
ENST00000614703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000220867 ENST00000405341 0.089±0.00 0.180±0.00 0.466±0.00 0.979±0.66 0.128±0.00 0.592±0.35 N/A 0.518±0.00 3.968±0.00 0.198±0.00 N/A 0.751±0.88 0.119±0.00 0.111±0.00
ENSG00000233496 ENST00000442328 0.031±0.00 0.160±0.00 0.152±0.00 0.109±0.00 0.169±0.00 0.213±0.00 0.300±0.16 0.065±0.00 0.298±0.00 0.057±0.00 0.027±0.00 0.190±0.06 N/A 0.481±0.39
ENSG00000234361 ENST00000411838 N/A 0.116±0.00 N/A 0.056±0.00 0.240±0.00 N/A 0.080±0.04 N/A 0.301±0.00 N/A N/A 0.075±0.05 N/A 1.612±0.10
ENSG00000236324 ENST00000446768 N/A N/A N/A 0.083±0.00 N/A 0.299±0.00 0.096±0.00 N/A N/A N/A N/A 1.037±0.95 N/A N/A
ENSG00000252658 ENST00000516849 N/A N/A N/A N/A 0.634±0.00 N/A N/A N/A 0.575±0.00 N/A N/A 21.097±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002365 ENSMUST00000002436 11.488±6.70 8.988±2.09 N/A 3.120±0.00 12.169±0.00 12.087±2.56 N/A 8.660±0.00 1.558±0.00 N/A 3.012±0.55 14.407±9.76 51.715±29.97 4.821±0.00

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