C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: oligophrenin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000079482 OPHN1 9606 - X:68042344-68433913 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355520 OPHN1-001 68042344-68433805 protein_coding
  ENST00000467444 OPHN1-002 68192742-68210268 processed_transcript
  ENST00000484842 OPHN1-004 68063854-68112422 processed_transcript
  ENST00000486068 OPHN1-003 68299001-68336452 processed_transcript
  ENST00000491714 OPHN1-005 68432931-68433913 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355520
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355520 0.813±0.00 1.054±0.00 1.339±0.00 3.224±0.45 1.462±0.45 1.424±0.95 0.678±0.12 1.036±0.00 1.052±0.90 1.212±0.00 0.407±0.00 1.044±0.68 1.396±1.01 1.370±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SR CIL_0001SR_0002 CGP X:67544032-68433913
CIL_0001SQ CIL_0001SQ_0002 CGP X:68042344-68537285

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005100 IEA Rho GTPase activator activity
GO:0005515 IEA protein binding
GO:0005543 IDA phospholipid binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006930 TAS substrate-dependent cell migration, cell extension
GO:0007165 TAS:IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007399 TAS nervous system development
GO:0007411 TAS axon guidance
GO:0015629 IEA actin cytoskeleton
GO:0030036 IEA actin cytoskeleton organization
GO:0030054 IEA cell junction
GO:0030100 IEA regulation of endocytosis
GO:0030425 IEA dendrite
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035255 IEA ionotropic glutamate receptor binding
GO:0043195 IEA terminal bouton
GO:0043197 IEA dendritic spine
GO:0048488 IEA synaptic vesicle endocytosis
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0051966 IEA regulation of synaptic transmission, glutamatergic
GO:1901799 IEA negative regulation of proteasomal protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035420 ophn1 oligophrenin 1 protein_coding Danio_rerio
ENSMUSG00000031214 Ophn1 oligophrenin 1 protein_coding Mus_musculus

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