C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: oligophrenin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355520 OPHN1-001 ENSG00000079482 9606 - X:68042344-68433805 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355520
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355520 0.813±0.00 1.054±0.00 1.339±0.00 3.224±0.45 1.462±0.45 1.424±0.95 0.678±0.12 1.036±0.00 1.052±0.90 1.212±0.00 0.407±0.00 1.044±0.68 1.396±1.01 1.370±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001SR CIL_0001SR_0002 CGP X:67544032-68433913
CIL_0001SQ CIL_0001SQ_0002 CGP X:68042344-68537285

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005100 IEA Rho GTPase activator activity
GO:0005515 IEA protein binding
GO:0005543 IDA phospholipid binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006930 TAS substrate-dependent cell migration, cell extension
GO:0007165 TAS:IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0007399 TAS nervous system development
GO:0007411 TAS axon guidance
GO:0015629 IEA actin cytoskeleton
GO:0030036 IEA actin cytoskeleton organization
GO:0030054 IEA cell junction
GO:0030100 IEA regulation of endocytosis
GO:0030425 IEA dendrite
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035255 IEA ionotropic glutamate receptor binding
GO:0043195 IEA terminal bouton
GO:0043197 IEA dendritic spine
GO:0048488 IEA synaptic vesicle endocytosis
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0051966 IEA regulation of synaptic transmission, glutamatergic
GO:1901799 IEA negative regulation of proteasomal protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033560 Ophn1-001 protein_coding Mus_musculus 0 3025
ENSMUST00000113826 Ophn1-004 protein_coding Mus_musculus 0 2920
ENSMUST00000147805 Ophn1-006 retained_intron Mus_musculus 0 917
ENSMUST00000125150 Ophn1-005 retained_intron Mus_musculus 0 917
ENSMUST00000142267 Ophn1-002 protein_coding Mus_musculus 0 436
ENSMUST00000156917 Ophn1-007 retained_intron Mus_musculus 0 350
ENSMUST00000140598 Ophn1-008 processed_transcript Mus_musculus 0 239
ENSMUST00000156634 Ophn1-003 retained_intron Mus_musculus 0 231

Loading