C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001SQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000035420-ENSDARG00000054433 CGP 7955 5:37300581-37372780
GeneTranscriptPositionBiotype
ENSDARG00000035420 (ophn1)
oligophrenin 1 		ENSDART00000046157 (ophn1-201) 37300581-37361639 protein_coding
ENSDART00000123562 (ophn1-001) 37301595-37361639 protein_coding
ENSDART00000144654 (ophn1-002) 37343445-37346125 retained_intron
CIL_0001SQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000079482-ENSG00000181704 CGP 9606 X:68042344-68537285
GeneTranscriptPositionBiotype
ENSG00000079482 (OPHN1)
oligophrenin 1 		ENST00000355520 (OPHN1-001) 68042344-68433805 protein_coding
ENST00000467444 (OPHN1-002) 68192742-68210268 processed_transcript
ENST00000484842 (OPHN1-004) 68063854-68112422 processed_transcript
ENST00000486068 (OPHN1-003) 68299001-68336452 processed_transcript
ENST00000491714 (OPHN1-005) 68432931-68433913 processed_transcript
ENSG00000181704 (YIPF6)
Yip1 domain family, member 6 		ENST00000374622 (YIPF6-201) 68498782-68537266 protein_coding
ENST00000374643 (YIPF6-004) 68499049-68531970 processed_transcript
ENST00000451537 (YIPF6-003) 68498562-68531982 protein_coding
ENST00000462683 (YIPF6-001) 68498323-68537285 protein_coding
ENST00000462972 (YIPF6-005) 68499081-68513405 processed_transcript
ENST00000470730 (YIPF6-002) 68499034-68515340 processed_transcript
ENST00000496576 (YIPF6-006) 68511807-68513641 processed_transcript
ENSG00000228125 (AKIRIN1P2)
akirin 1 pseudogene 2 		ENST00000440655 (AKIRIN1P2-001) 68132868-68133437 processed_pseudogene
ENSG00000228328 (RP11-516A11.1)
 ENST00000426382 (RP11-516A11.1-001) 68070520-68071767 processed_pseudogene
CIL_0001SQ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031214-ENSMUSG00000047694 CGP 10090 X:98554277-98949017
GeneTranscriptPositionBiotype
ENSMUSG00000031214 (Ophn1)
oligophrenin 1 		ENSMUST00000033560 (Ophn1-001) 98554277-98890985 protein_coding
ENSMUST00000113826 (Ophn1-004) 98558251-98890781 protein_coding
ENSMUST00000125150 (Ophn1-005) 98712199-98891025 retained_intron
ENSMUST00000140598 (Ophn1-008) 98873726-98890384 processed_transcript
ENSMUST00000142267 (Ophn1-002) 98732392-98890985 protein_coding
ENSMUST00000147529 (Ophn1-009) 98558257-98578489 protein_coding
ENSMUST00000147805 (Ophn1-006) 98712427-98890985 retained_intron
ENSMUST00000154920 (Ophn1-010) 98563569-98578435 processed_transcript
ENSMUST00000156634 (Ophn1-003) 98887780-98890625 retained_intron
ENSMUST00000156917 (Ophn1-007) 98801801-98890609 retained_intron
ENSMUSG00000047694 (Yipf6)
Yip1 domain family, member 6 		ENSMUST00000054697 (Yipf6-001) 98937761-98949017 protein_coding
ENSMUST00000113811 (Yipf6-002) 98936316-98945131 protein_coding
ENSMUST00000124010 (Yipf6-006) 98937301-98939881 protein_coding
ENSMUST00000140479 (Yipf6-004) 98938207-98944035 retained_intron
ENSMUST00000149082 (Yipf6-003) 98937761-98944906 retained_intron
ENSMUST00000151353 (Yipf6-005) 98937273-98943635 protein_coding
ENSMUSG00000099037 (Gm27554)
predicted gene, 27554 		ENSMUST00000185074 (Gm27554-201) 98727315-98727412 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001SQ_0001ENSDARG00000035420ENSDART00000046157ENSDART00000123562ENSDART00000144654CIL_0001SQ_0002ENSG00000079482ENST00000355520ENST00000467444ENST00000484842ENST00000486068ENST00000491714ENSG00000181704ENST00000374622ENST00000374643ENST00000451537ENST00000462683ENST00000462972ENST00000470730ENST00000496576ENSG00000228125ENST00000440655ENSG00000228328ENST00000426382CIL_0001SQ_0003ENSMUSG00000031214ENSMUST00000033560ENSMUST00000113826ENSMUST00000125150ENSMUST00000140598ENSMUST00000142267ENSMUST00000147529ENSMUST00000147805ENSMUST00000154920ENSMUST00000156634ENSMUST00000156917ENSMUSG00000047694ENSMUST00000054697ENSMUST00000113811ENSMUST00000124010ENSMUST00000140479ENSMUST00000149082ENSMUST00000151353ENSMUSG00000099037ENSMUST00000185074
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001SQ_0001ENSDARG00000035420ENSDART00000046157ENSDART00000123562ENSDART00000144654CIL_0001SQ_0002ENSG00000079482ENST00000355520ENSG00000181704ENST00000374622ENST00000374643ENST00000462683ENSG00000228125ENST00000440655ENSG00000228328ENST00000426382CIL_0001SQ_0003ENSMUSG00000031214ENSMUST00000033560ENSMUST00000113826ENSMUST00000125150ENSMUST00000142267ENSMUST00000147805ENSMUST00000156634ENSMUST00000156917ENSMUSG00000047694ENSMUST00000054697ENSMUST00000113811ENSMUST00000149082ENSMUST00000151353ENSMUSG00000099037ENSMUST00000185074
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000035420 ENSDART00000046157 N/A N/A N/A N/A N/A N/A 1.482±0.00 8.089±0.20 N/A N/A N/A N/A N/A N/A
ENSDART00000123562 N/A N/A N/A 0.660±0.15 N/A N/A 0.882±0.23 N/A N/A N/A 0.696±0.00 N/A N/A N/A
ENSDART00000144654 N/A N/A N/A N/A N/A N/A 0.884±0.56 3.294±0.45 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000079482 ENST00000355520 0.813±0.00 1.054±0.00 1.339±0.00 3.224±0.45 1.462±0.45 1.424±0.95 0.678±0.12 1.036±0.00 1.052±0.90 1.212±0.00 0.407±0.00 1.044±0.68 1.396±1.01 1.370±0.38
ENST00000467444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000181704 ENST00000374622 2.782±0.00 2.255±0.00 1.545±0.00 3.230±0.00 5.444±0.00 4.901±0.00 N/A 4.069±0.83 3.250±0.00 3.448±1.38 3.947±0.00 N/A 2.091±1.40 3.387±0.62
ENST00000374643 N/A N/A N/A N/A N/A N/A N/A N/A 8.216±0.00 N/A N/A N/A N/A N/A
ENST00000451537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462683 2.488±0.00 1.072±0.00 1.233±0.00 1.565±0.15 2.639±0.92 1.200±0.09 1.003±0.33 1.246±0.16 1.089±0.15 1.982±0.58 0.874±0.08 3.296±1.54 1.960±0.51 1.447±0.96
ENST00000462972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228125 ENST00000440655 N/A N/A N/A N/A N/A 0.210±0.00 N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A
ENSG00000228328 ENST00000426382 0.166±0.00 0.047±0.00 0.165±0.00 0.111±0.04 0.413±0.00 0.054±0.00 0.042±0.02 0.059±0.00 0.067±0.01 0.656±0.00 0.041±0.00 0.070±0.05 0.028±0.01 0.074±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031214 ENSMUST00000033560 1.545±0.46 N/A 1.149±0.08 4.049±0.28 1.376±0.21 0.708±0.20 0.213±0.00 0.389±0.15 0.167±0.08 0.873±0.23 0.221±0.09 0.803±0.31 0.137±0.07 N/A
ENSMUST00000113826 2.585±0.75 N/A 2.695±0.04 3.923±0.83 1.422±0.15 0.761±0.17 0.713±0.14 0.359±0.11 0.328±0.16 0.578±0.05 0.652±0.17 3.198±1.44 0.521±0.21 3.671±0.42
ENSMUST00000125150 N/A 0.621±0.07 N/A N/A N/A N/A N/A N/A 0.064±0.01 N/A N/A 0.706±0.00 N/A N/A
ENSMUST00000140598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142267 3.964±0.48 1.855±0.39 N/A N/A 4.543±0.79 4.342±0.58 N/A 0.963±0.26 0.266±0.09 3.239±1.12 N/A 5.345±1.25 N/A N/A
ENSMUST00000147529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147805 N/A N/A N/A N/A N/A N/A 0.434±0.00 N/A 0.060±0.00 N/A N/A 1.027±0.00 N/A N/A
ENSMUST00000154920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156634 N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.02 N/A N/A N/A N/A N/A
ENSMUST00000156917 N/A 3.453±1.43 N/A N/A 5.572±0.44 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047694 ENSMUST00000054697 3.416±1.64 2.967±0.80 6.051±2.61 4.719±1.60 2.814±1.05 4.744±1.38 3.074±0.16 3.278±0.85 2.911±1.40 7.403±2.83 0.608±0.12 1.649±0.58 1.830±0.55 1.583±0.00
ENSMUST00000113811 10.016±1.14 8.217±2.42 N/A N/A 8.913±1.96 19.874±1.94 5.285±1.01 9.512±2.00 8.111±1.45 17.178±1.82 N/A 8.226±1.69 11.763±4.25 9.541±1.39
ENSMUST00000124010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.291±0.00
ENSMUST00000151353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.198±1.55 7.719±0.00
ENSMUSG00000099037 ENSMUST00000185074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.574±0.00

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