C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: replication timing regulatory factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000080345 RIF1 9606 + 2:151409883-151508013 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000243326 RIF1-001 151409941-151482172 protein_coding
  ENST00000414861 RIF1-006 151409956-151455110 protein_coding
  ENST00000428287 RIF1-004 151409886-151475388 protein_coding
  ENST00000430328 RIF1-007 151410090-151475388 protein_coding
  ENST00000444746 RIF1-003 151409883-151475388 protein_coding
  ENST00000453091 RIF1-002 151409883-151475622 protein_coding
  ENST00000454583 RIF1-008 151464700-151508013 nonsense_mediated_decay
  ENST00000457745 RIF1-009 151486277-151498213 processed_transcript
  ENST00000467762 RIF1-012 151505948-151507112 processed_transcript
  ENST00000484077 RIF1-010 151494975-151498215 processed_transcript
  ENST00000494333 RIF1-005 151409900-151420379 processed_transcript
  ENST00000498041 RIF1-014 151420225-151423760 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000243326ENST00000428287ENST00000430328ENST00000444746ENST00000453091
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000243326 1.533±0.00 0.675±0.00 1.282±0.00 2.164±0.66 1.769±0.67 0.760±0.16 N/A 0.177±0.00 2.929±0.00 2.465±2.24 0.775±0.00 2.177±1.09
ENST00000428287 N/A N/A N/A N/A N/A N/A 1.198±0.00 N/A 1.981±0.00 N/A N/A N/A
ENST00000430328 N/A N/A N/A N/A N/A N/A N/A 2.988±0.00 N/A N/A N/A N/A
ENST00000444746 N/A N/A 1.176±0.00 N/A 2.186±0.00 0.900±0.00 N/A 3.727±0.00 1.911±0.00 7.052±0.00 N/A N/A
ENST00000453091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.871±0.00 5.985±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S5 CIL_0003S5_0002 CGP 2:151357592-151508013
CIL_0003S6 CIL_0003S6_0002 CGP 2:151409883-151734487

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000781 IEA chromosome, telomeric region
GO:0001939 IEA female pronucleus
GO:0001940 IEA male pronucleus
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007049 IEA cell cycle
GO:0019827 IEA stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062650 rif1 RAP1 interacting factor homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000036202 Rif1 Rap1 interacting factor 1 homolog (yeast) protein_coding Mus_musculus

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