C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Rap1 interacting factor 1 homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036202 Rif1 10090 + 2:52072837-52122383 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069794 Rif1-001 52072842-52122383 protein_coding
  ENSMUST00000112693 Rif1-201 52072837-52122381 protein_coding
  ENSMUST00000125116 Rif1-007 52093195-52098444 processed_transcript
  ENSMUST00000125322 Rif1-004 52110984-52122056 processed_transcript
  ENSMUST00000125376 Rif1-005 52111461-52122109 processed_transcript
  ENSMUST00000126218 Rif1-006 52073072-52076205 processed_transcript
  ENSMUST00000145130 Rif1-002 52089573-52107725 processed_transcript
  ENSMUST00000152178 Rif1-003 52112133-52122381 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069794ENSMUST00000112693ENSMUST00000125322ENSMUST00000125376ENSMUST00000126218ENSMUST00000145130ENSMUST00000152178
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069794 0.108±0.00 0.205±0.04 N/A N/A 0.310±0.21 0.715±0.00 0.255±0.00 0.412±0.00 0.926±0.50 N/A 0.313±0.06 1.737±0.88 1.297±0.57 2.625±0.00
ENSMUST00000112693 0.320±0.24 0.225±0.00 0.776±0.18 2.019±0.54 0.417±0.37 0.387±0.00 0.246±0.00 0.250±0.07 1.892±1.38 0.502±0.17 0.321±0.06 1.060±0.18 1.044±0.59 1.807±0.78
ENSMUST00000125322 N/A N/A 0.926±0.21 3.564±0.00 N/A N/A N/A N/A N/A N/A 0.783±0.28 6.107±3.23 2.495±2.18 25.418±0.00
ENSMUST00000125376 0.178±0.00 N/A 0.993±0.27 N/A 0.459±0.13 N/A N/A 0.244±0.00 1.207±0.75 N/A 0.432±0.00 1.930±0.00 1.292±0.00 N/A
ENSMUST00000126218 N/A 6.739±1.53 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145130 N/A 0.579±0.00 N/A N/A N/A N/A N/A 0.599±0.00 N/A 0.933±0.00 N/A N/A N/A N/A
ENSMUST00000152178 N/A N/A 3.049±0.70 3.789±0.93 N/A N/A N/A N/A 3.006±1.85 N/A 0.852±0.24 N/A 2.623±0.95 2.571±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S5 CIL_0003S5_0003 CGP 2:52038009-52122383
CIL_0003S6 CIL_0003S6_0003 CGP 2:52072837-52338798

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000781 IDA chromosome, telomeric region
GO:0001939 IDA female pronucleus
GO:0001940 IDA male pronucleus
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007049 IEA cell cycle
GO:0019827 IMP stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062650 rif1 RAP1 interacting factor homolog (yeast) protein_coding Danio_rerio
ENSG00000080345 RIF1 replication timing regulatory factor 1 protein_coding Homo_sapiens

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