C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: replication timing regulatory factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243326 RIF1-001 ENSG00000080345 9606 + 2:151409941-151482172 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000243326
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000243326 1.533±0.00 0.675±0.00 1.282±0.00 2.164±0.66 1.769±0.67 0.760±0.16 0.177±0.00 2.929±0.00 2.465±2.24 0.775±0.00 2.177±1.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S5 CIL_0003S5_0002 CGP 2:151357592-151508013
CIL_0003S6 CIL_0003S6_0002 CGP 2:151409883-151734487

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000781 IEA chromosome, telomeric region
GO:0001939 IEA female pronucleus
GO:0001940 IEA male pronucleus
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0007049 IEA cell cycle
GO:0019827 IEA stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112693 Rif1-201 protein_coding Mus_musculus 0 3773
ENSMUST00000069794 Rif1-001 protein_coding Mus_musculus 0 3773
ENSMUST00000145130 Rif1-002 processed_transcript Mus_musculus 0 1343
ENSMUST00000125376 Rif1-005 processed_transcript Mus_musculus 0 859
ENSMUST00000152178 Rif1-003 processed_transcript Mus_musculus 0 603
ENSMUST00000125322 Rif1-004 processed_transcript Mus_musculus 0 599
ENSMUST00000125116 Rif1-007 processed_transcript Mus_musculus 0 486

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